Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0264 ATGGGTGAAGCTATGGAAGCTGAAGAAAGGCCCAAATTCAGAGATATCAGACGCTATTTCTGCGAGTTCTGCGGTATCTGCAGGTCCAAGAAAACCCTCATCACCTCTCACATGAATTCACACCACAAGGAGGAGGTGGAAAAGGCAAGAGCTGAAAGAGAAAGAGAACCCGAATCTGAGGCTGTGACATCCAACACGTGCGGGGAATGTGGTGCCAGTTTCAAAAAACATGCTTATTTGTTGCAGCACATGCAAAGTCATTCGCTTGAGAGGCCGTATGTGTGTGTTGTGGATGATTGTCAGGCAAGTTACCGAAGGAAGGATCACCTGAGTCGTCACCTTTTACAGCATCAAGGGAAGACTTTTAAATGCCCTGTTGAGAATTGCAGCACTGAATTCTCTTTGCAAAGCAATGTGAAACGACATGTTGAGGAGATCCATGATGACAGTTCTACCTCTACATGTGACAAAACTCACAAGCAGCACACATGTCCAGAAATTGGTTGTGGAAAGGTTTTCAAATTTGCATCACAGCTACGAAAACATGAAGATTCTCATGTTAAGCTGGAGTCAGTAGATGTGGTGTGTTTAGAGCCTGGTTGCATGAAGCATTTCACTAATGTCCAGTGCCTTCAAGCCCATGTAAAGTCCACCCATCAATACATGACCTGTGAAACTTGTGGTACTAAGCAACTAAAGAAGAATATTAAGCGTCACCTTCGTACGCACGAACCTATCAGTTCACCAGAGACCTTTCGATGTGACTTCAAGGGTTGCAGCTGCACATTTTCAAGAAAATCTAATCTTGATAAGCATAAGAAGGTTGTTCACTTCAAGGAAAAACCTTTTGTGTGTGGGTATGCTGATTGTGGCATGAGATTTGCTTACAAACACGTGCGAGATAACCATGAGAAAACCACAAAACATGTTTTTACCCTTGGTGATTTTGAAAAGGCTGATGAAGAGTTCAGGTCAAGATCTAGGGGAGGGAGGAAGAGGAAATGTCCTTCTGTTGAAATGCTACTCAGGAACAGGGTTACCTCACCAAGTCAATTGGAGAGTTGGTTATTCATGGGGGATAGTGAGTAA 1089 0.4353 MGEAMEAEERPKFRDIRRYFCEFCGICRSKKTLITSHMNSHHKEEVEKARAEREREPESEAVTSNTCGECGASFKKHAYLLQHMQSHSLERPYVCVVDDCQASYRRKDHLSRHLLQHQGKTFKCPVENCSTEFSLQSNVKRHVEEIHDDSSTSTCDKTHKQHTCPEIGCGKVFKFASQLRKHEDSHVKLESVDVVCLEPGCMKHFTNVQCLQAHVKSTHQYMTCETCGTKQLKKNIKRHLRTHEPISSPETFRCDFKGCSCTFSRKSNLDKHKKVVHFKEKPFVCGYADCGMRFAYKHVRDNHEKTTKHVFTLGDFEKADEEFRSRSRGGRKRKCPSVEMLLRNRVTSPSQLESWLFMGDSE* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0264 362 Gene3D Classic Zinc Finger 120 159 - -
Pvu5g0264 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 122 IPR013087 -
Pvu5g0264 362 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Pvu5g0264 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 282 IPR013087 -
Pvu5g0264 362 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Pvu5g0264 362 SUPERFAMILY beta-beta-alpha zinc fingers 80 119 IPR036236 -
Pvu5g0264 362 ProSitePatterns Zinc finger C2H2 type domain signature. 95 117 IPR013087 -
Pvu5g0264 362 Gene3D Classic Zinc Finger 5 93 - -
Pvu5g0264 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Pvu5g0264 362 SUPERFAMILY beta-beta-alpha zinc fingers 103 160 IPR036236 -
Pvu5g0264 362 Gene3D Classic Zinc Finger 160 244 - -
Pvu5g0264 362 Gene3D Classic Zinc Finger 247 328 - -
Pvu5g0264 362 PANTHER - 9 352 - -
Pvu5g0264 362 Gene3D Classic Zinc Finger 94 119 - -
Pvu5g0264 362 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Pvu5g0264 362 MobiDBLite consensus disorder prediction 38 58 - -
Pvu5g0264 362 PANTHER ZINC FINGER PROTEIN 9 352 - -
Pvu5g0264 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 152 IPR013087 -
Pvu5g0264 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Pvu5g0264 362 ProSitePatterns Zinc finger C2H2 type domain signature. 285 309 IPR013087 -
Pvu5g0264 362 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Pvu5g0264 362 ProSitePatterns Zinc finger C2H2 type domain signature. 196 219 IPR013087 -
Pvu5g0264 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 191 IPR013087 -
Pvu5g0264 362 SMART c2h2final6 162 186 IPR013087 -
Pvu5g0264 362 SMART c2h2final6 65 87 IPR013087 -
Pvu5g0264 362 SMART c2h2final6 283 309 IPR013087 -
Pvu5g0264 362 SMART c2h2final6 252 277 IPR013087 -
Pvu5g0264 362 SMART c2h2final6 222 243 IPR013087 -
Pvu5g0264 362 SMART c2h2final6 194 219 IPR013087 -
Pvu5g0264 362 SMART c2h2final6 93 117 IPR013087 -
Pvu5g0264 362 SMART c2h2final6 19 41 IPR013087 -
Pvu5g0264 362 SMART c2h2final6 122 147 IPR013087 -
Pvu5g0264 362 Pfam Zinc finger, C2H2 type 162 186 IPR013087 -
Pvu5g0264 362 Pfam Zinc finger, C2H2 type 93 117 IPR013087 -
Pvu5g0264 362 Pfam Zinc finger, C2H2 type 252 277 IPR013087 -
Pvu5g0264 362 Pfam Zinc finger, C2H2 type 66 87 IPR013087 -
Pvu5g0264 362 SUPERFAMILY beta-beta-alpha zinc fingers 234 291 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0264 Pvu-Chr5 2291534 2294576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0264 89 312 C2H2 Transcription Factor Family AT1G72050 50.362 4.32e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g0264 zf-C2H2 0.01 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0264 K09191 - gmx:100801812 608.216