Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0260 ATGAAAATCCCGTGTTGTTCGGTTTGCCAAACGCGGTACAACGAGGAGGAGAGAGTTCCGCTTCTGCTCCAATGCGGCCACGGATTCTGCAGAGACTGTCTCTCTAGAATGTTCGCGGCGTCTTTGGACGCCACGCTGGCGTGTCCGAGGTGCCGACACGTGTCCACCGTGGGGAACTCCGTGCAGGCGCTGCGGAAGAACTACGCGGTGCTCGCGCTGCTGCACTCCAACACTGCCGCCGCCAACGGCGGCGGGGGAGGAGGGGGAGGGGGGAATTTCGACTGCGACTACACCGACGACGAGGAGGAGGAGGACGGAGGAAGGGAGGAGGACGAGGACGACGAGAAGCGGCGGAGGAACAGCCGGGAGTCGCAGGCGTCGAGCTCGGGCGGGTGCGAGCCGGTGATCGAGGTCGGCGGCGGCGCGCACCAGGAACTGAAGTTGGTGCGGCGGATTGGGGAGGGGAGGAGGGCGGGAGTGGAGATGTGGATGGCGGTGATCGGCGGGGGCGGTGGAGGGGAGGGAGGGAGGCGGTGCCGGCACAGCGTGGCGGTGAAGAAGGTGGCGGTGGTGGAGGGGATGGATTTGGATTGGGTTCAGGGAAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTGTGCACTTTCCATGGGACAATGAGGGTGGAGGACAGTTTGTGCCTCGTGATGGATAAGTGCTATGGATCGGTTCAGTCAGTGATGCAGCGCAATGAGGGGAGGCTCACTTTGGAACAAGTGCTAAGATACGGGGCTGACATTGCCCGAGGGGTTGTTGAGCTTCATGCTGCTGGCGTTGTTTGCATGAATTTAAAACCATCCAATCTTCTTCTTGACGCAAATGGTCACGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCACGACCAGAGTGTGATTCCGCAAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACGGCACCGGAGGCTTGGGAACCTGTGAAGAAATCGTTAAATTTGTTTTGGGATGATGGAATAGGTATATCTTCGGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTTCCATTCCTTGGGCAGGTTTAAGTGCAGAGGAAATTTATCGAGCTGTTGTTAAAGCTAAGAAACTACCTCCACAGTATGCTAGTGTGGTTGGAGGTGGAATCCCAAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCAATGCTGGCAATATTTCTCCGTCATTTGCAGGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGGCTTAGATAATAAGGGCTCTGTATCAACTGTGATGGAGCCTTCACCAGTACCTGAATTGGAAGTTCCTCAGGAAAACCCTAACCAACTTCATCGACTTGTGTCTGAAGGAGATACTCCAGGTGTTAGAGATCTTCTTGCAAAGGCTGGATTAGAAAATGGCAGCAACTACCTATCTTCATTATTGGAAGCTCAAAATGCCGATGGACAAACAGCTCTCCACTTAGCTTGTAGACGGGGCAGTGCAGAACTTGTCGAGACAATTTTGGAGTATAGAGAAGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGGTCCCCAGAATGTGTTCGCAGCCTTATCAAAAGAAATGCTAATGTGCAGTCAAGATTGAGAGATGGTTTTGGTCCATCTGTAGCTCACGTTTGTGCCTATCATGGCCAGCCAGATTGTATGCGAGAATTACTATTAGCTGGAGCTGATCCTAATGCAGTGGATGATGAAGGTGAATCTGTTCTGCATAGAGCAATTTCCAAGAAGTACACAGACTGTGCACTTGTAATATTGGAGAATGGAGGATGTAAATCAATGGCCATCGTGAATTCAAAGAACTTGACACCACTGCACTTGTGTGTGGCAACATGGAATGTTGCTGTTGTGAAGAGATGGGCGAAAGTTGCAACTTCTGATGAGATTGCTGAAGCAATTGACATACCAAGTCCTATTGGCACTGCATTGTGCATGGCAGCTGCTTCTAAGAAAGATCATGAGAATGAGGGCAGAGAACTGGTGCAGATACTGCTTGCAGCCGGAGCTGATCCATCTGCTCAAGATTCACAAAATGGGAGGACAGCGTTGCATACAGCTGCTATGACTAATGATGTGGACTTGGTTAAGGCTATTCTGGCTGCTGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTAGCTGCTGGAGCGAATTATAATTTGCAGGATGACGATGGTGACAATGCTTTCCATATAGCAGCTGAGACAGCAAAAATGATTCGTGAAAATATGAACTGGCTTATTATTATGCTAACGAACCCTGATGCTGACATTGAAGTCAGAAACCACAGCGGCAAGACGCCACGTGACATTTTGGAGGCTCTCCCCCGAGAATGGTTATCTGAAGATCTGGTGGAAGCACTTGCAAATAGGGGAGTTCATTTGTCTCCTACATCATTTGAAGTGGGAGACTGGGTGAAGTTTAAAAAATCTGTCACAACTCCAACACATGGATGGCAAGGTGCTAATATACACAGTGTTGGTTTTGTGCAAAGGGTCCCTGACAAAGATAATCTCATTGTTTCATTTTGTTCTGGAGAGGTCCATCTTCTGGTAAATGAAGTTATAAAAGTCATTCCATTGGACAGGGGACAACATGTGCAACTGAAAGAAGATGTAAAAGAGCCTAGATTTGGTTGGCGTGGGCAGTCACGGGACAGCATTGGGACAGTATTATGTGTTGACGATGATGGAATCCTCCGTGTTGGGTTTCCTGGAGCATCGAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGTGTTGAAGAATTCAAGGTTGGAGACTGGGTTCGCATTCGTCCAACTCTTACATCTGCAAAGCATGGACTAGGATCTGTGACTCCAGGAAGCATTGGCATTGTATATTGTATACGTCCAGACAGTAGTCTGTTAATAGAACTGAGTTATCTTCCAAATCCATGGCATTGTGAGCCAGAGGAGGTGGAGCATGTTGCTCCTTTTACGATTGGTGATCGGGTATGCGTGAAACGATCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGTGAGATCGAGAATGATGGTCTCTTAATAATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCATCGGATATGGAGAAGGTGGAAGATTTCAAGGTTGGAGATTGGGTAAGAGTGAAAGCTTCAGTGTCTTCCCCAAAATATGGATGGGAAGATATTACAAGGAATAGTATTGGTGTAATTCATGGATTGGAGGAGGATGGCGATATGGGTGTTGCTTTTTGCTTCAGAAGTAAGCCTTTTTCTTGCTCAGTCACTGATGTGGAGAAAGTTCCTCCGTTTGAGGTGGGACAAGAAATTCATCTGATGGCATCAGTTACTCAGCCGCGTCTTGGGTGGTCAAATGAATCAGCAGCTACTGTTGGAAAAGTAGTGAGAATTGACATGGATGGTGCTCTCAACGTAA 3703 0.4839 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRDCLSRMFAASLDATLACPRCRHVSTVGNSVQALRKNYAVLALLHSNTAAANGGGGGGGGGNFDCDYTDDEEEEDGGREEDEDDEKRRRNSRESQASSSGGCEPVIEVGGGAHQELKLVRRIGEGRRAGVEMWMAVIGGGGGGEGGRRCRHSVAVKKVAVVEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEDSLCLVMDKCYGSVQSVMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSAKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNGLDNKGSVSTVMEPSPVPELEVPQENPNQLHRLVSEGDTPGVRDLLAKAGLENGSNYLSSLLEAQNADGQTALHLACRRGSAELVETILEYREANVDVLDKDGDPPLVFALAAGSPECVRSLIKRNANVQSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAISKKYTDCALVILENGGCKSMAIVNSKNLTPLHLCVATWNVAVVKRWAKVATSDEIAEAIDIPSPIGTALCMAAASKKDHENEGRELVQILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVKAILAAGVDVNIRNVHNSIPLHLALARGAKACVGLLLAAGANYNLQDDDGDNAFHIAAETAKMIRENMNWLIIMLTNPDADIEVRNHSGKTPRDILEALPREWLSEDLVEALANRGVHLSPTSFEVGDWVKFKKSVTTPTHGWQGANIHSVGFVQRVPDKDNLIVSFCSGEVHLLVNEVIKVIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFTIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHGLEEDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHLMASVTQPRLGWSNESAATVGKVVRIDMDGALNV 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0260 1234 PRINTS Ankyrin repeat signature 525 540 IPR002110 GO:0005515
Pvu5g0260 1234 PRINTS Ankyrin repeat signature 721 735 IPR002110 GO:0005515
Pvu5g0260 1234 Pfam Ankyrin repeats (many copies) 596 643 IPR002110 GO:0005515
Pvu5g0260 1234 ProSiteProfiles Ankyrin repeat profile. 739 771 IPR002110 GO:0005515
Pvu5g0260 1234 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Pvu5g0260 1234 ProSiteProfiles Ankyrin repeat region circular profile. 772 804 - -
Pvu5g0260 1234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1234 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Pvu5g0260 1234 Gene3D - 473 592 IPR036770 -
Pvu5g0260 1234 MobiDBLite consensus disorder prediction 91 137 - -
Pvu5g0260 1234 Gene3D Transferase(Phosphotransferase) domain 1 236 456 - -
Pvu5g0260 1234 ProSiteProfiles Protein kinase domain profile. 146 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0260 1234 Pfam Mind bomb SH3 repeat domain 934 998 IPR040847 -
Pvu5g0260 1234 Pfam Mind bomb SH3 repeat domain 880 924 IPR040847 -
Pvu5g0260 1234 Pfam Mind bomb SH3 repeat domain 1004 1124 IPR040847 -
Pvu5g0260 1234 ProSiteProfiles Ankyrin repeat region circular profile. 524 546 - -
Pvu5g0260 1234 MobiDBLite consensus disorder prediction 95 110 - -
Pvu5g0260 1234 Pfam RING-type zinc-finger 6 49 IPR027370 -
Pvu5g0260 1234 Gene3D - 779 868 IPR036770 -
Pvu5g0260 1234 SUPERFAMILY Ankyrin repeat 520 848 IPR036770 -
Pvu5g0260 1234 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Pvu5g0260 1234 MobiDBLite consensus disorder prediction 448 492 - -
Pvu5g0260 1234 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Pvu5g0260 1234 SUPERFAMILY RING/U-box 5 61 - -
Pvu5g0260 1234 ProSiteProfiles Ankyrin repeat region circular profile. 739 770 - -
Pvu5g0260 1234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1234 - -
Pvu5g0260 1234 ProSiteProfiles Ankyrin repeat profile. 558 590 IPR002110 GO:0005515
Pvu5g0260 1234 SMART ANK_2a 739 768 IPR002110 GO:0005515
Pvu5g0260 1234 SMART ANK_2a 699 734 IPR002110 GO:0005515
Pvu5g0260 1234 SMART ANK_2a 772 801 IPR002110 GO:0005515
Pvu5g0260 1234 SMART ANK_2a 558 587 IPR002110 GO:0005515
Pvu5g0260 1234 SMART ANK_2a 593 622 IPR002110 GO:0005515
Pvu5g0260 1234 SMART ANK_2a 661 692 IPR002110 GO:0005515
Pvu5g0260 1234 SMART ANK_2a 524 554 IPR002110 GO:0005515
Pvu5g0260 1234 SMART ANK_2a 626 657 IPR002110 GO:0005515
Pvu5g0260 1234 SMART ANK_2a 805 840 IPR002110 GO:0005515
Pvu5g0260 1234 SMART ring_2 6 51 IPR001841 -
Pvu5g0260 1234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Pvu5g0260 1234 Gene3D - 678 778 IPR036770 -
Pvu5g0260 1234 SUPERFAMILY Protein kinase-like (PK-like) 142 452 IPR011009 -
Pvu5g0260 1234 Gene3D - 593 677 IPR036770 -
Pvu5g0260 1234 Pfam Ankyrin repeats (3 copies) 708 803 IPR002110 GO:0005515
Pvu5g0260 1234 Pfam Ankyrin repeats (3 copies) 487 586 IPR002110 GO:0005515
Pvu5g0260 1234 ProSiteProfiles Ankyrin repeat profile. 524 557 IPR002110 GO:0005515
Pvu5g0260 1234 ProSiteProfiles Ankyrin repeat profile. 772 804 IPR002110 GO:0005515
Pvu5g0260 1234 Pfam Protein kinase domain 180 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0260 Pvu-Chr5 2269113 2280999 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0260 151 472 MAP Kinase Kinase Kinase AT1G53570 24.340 8.55e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Pvu5g0260 Pkinase 2.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0260 K16279 - gmx:100777576 2281.14