Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0254 ATGGATGAACTCCACTGTTGTGCATACCCTCAAGGATCTTCCTCTGATTCTGCCTCAGATTCTTCCAATGATCATCAACAACACGTAGAATCTTTCTCTGATTCTCCCTCAGATTCTTCCAATAATATACACTTCAACGTAGAGTTTGAGTACTCAAACATGCACGTGTTGAATGCAAGTAAATTCGACACATTTTGCAACGTTGAGGTCCACAGGTTTTCAAGCATTCCAAAGGATGAAATGATGCAAGAAACAACCATCCTGTCATGGCTTTCCCAGATGGATGTGCCTTGGAATGCTCACAGTGACGTGGTAGCAAAAGTGTTACAGTGTGCACGTGACATGCTGAGTGACACTGAAACCTTAGATCCTAAACCTTATAATCTTTATATGCATGTGAATGTGATCGTTACTATTCCAAAAGAAGATGGAATAAGTGACAGTGATAGCGAGAATTATGATGAAGAAGAAGAATACCAAGGTGTTCTTGCTGAAGAAGAGGAGGAGGAGGAAGATTATGGATTTGTGCCTGCAGCCAAGACATTGGTGGAACGTTTGGAGATATCTGAACAAAAGGGTTTGCAAAGGTGTGCCATTTGTTTCGATGATTTTCATGTTGGTGTTTCTATGCCTTGCTTGCACATGTTTCACAAAAGCTGCATCAGTGAGTGGTTGCAAATAGGCCACTCTTGCCCTCTGTGTCGCTTCAAAATGCCTACTCAGAGTGATTGA 732 0.418 MDELHCCAYPQGSSSDSASDSSNDHQQHVESFSDSPSDSSNNIHFNVEFEYSNMHVLNASKFDTFCNVEVHRFSSIPKDEMMQETTILSWLSQMDVPWNAHSDVVAKVLQCARDMLSDTETLDPKPYNLYMHVNVIVTIPKEDGISDSDSENYDEEEEYQGVLAEEEEEEEDYGFVPAAKTLVERLEISEQKGLQRCAICFDDFHVGVSMPCLHMFHKSCISEWLQIGHSCPLCRFKMPTQSD* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0254 243 MobiDBLite consensus disorder prediction 9 39 - -
Pvu5g0254 243 PANTHER F6A14.12 PROTEIN-RELATED 50 240 - -
Pvu5g0254 243 SMART ring_2 197 234 IPR001841 -
Pvu5g0254 243 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Pvu5g0254 243 SUPERFAMILY RING/U-box 196 241 - -
Pvu5g0254 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 243 IPR013083 -
Pvu5g0254 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 50 240 - -
Pvu5g0254 243 MobiDBLite consensus disorder prediction 10 39 - -
Pvu5g0254 243 Pfam Ring finger domain 196 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0254 Pvu-Chr5 2213385 2214116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0254 104 243 C3H Transcription Factor Family AT5G53910 27.152 1.00e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0254 - - pvu:PHAVU_005G024400g 458.373