Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0238 ATGGAAGCCGCAGTGGTAGACCCCGGTTCCAGCCTCCTCAAAGCCGGTTTTGCAATTCCCGATCAAACTCCCCCCATGATAATTCCCTCTCAAATGAAGTCAATGCTCGATGATGGGTCAGTGACCGATAACCCAACATTCGACGAGGTTGCCGTGGATCCGGTTTGCCGAGGTTATGTCAGAGATTGGGATGCCATGGAGGATTTGCTGCATTATGTATTGTATACTGGCCTTGGATGGGAAATTGGCAATGAAGGGCAGATACTGTTCACAGATCCACTTTGTAATCCGAAGGCTAACAAGGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCTTCTGAACAAGCAGTGTTGTCACTATATTCTGTAGGACGTATCTCTGGATGCACAGTTGACATTGGTCATGGAAAAATAGATATTGCACCAGTGATTGAGGGTGCTGTTAACCACATTGCTTCAAGAAGATTTGAGTTTGGAGGTATTGATCTAACTAATTTCCTTGCTCAAGAACTTGGCAAATCCAATCCACGAGTGAATATCAGCATCTCTGATGTTGAAAAAATAAAACAGCTATACTCATGCTGCGCTGAAGATGAATTAGCTTATCAGCAGACTCAAGATTCTTGCCCTGCGGAGACACATACCTTGCCTGACGGACAGGTCATTACAATTGGAAGAGAAAGATATACCATTGGTGAAGCTTTATTCCAGCCATGTCTATTGGGTTTAGAGGCTCATGGTATTATTGACCAGCTTGTTCGTACTATTTCAAATGTGTCATCTGATAATCATCGCCAACTTCTTGAAAATACTGTGGTTTGTGGTGGCACTTCTGCTATGACTGGTTTTGAGGAAAGATTTCAGAAGGAATCTAGCCTAAGTTCATCTGCCATTCGACCTACCCTAGTAAAGCCTCCAGAATACATGCCAGAAAATTTAACCGTATATTCGGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAATCAACATGTAACCAAGGCAGACTATGATGAAACTGGGCCTTCCATTGTTCACAGGAAATGCTTTTGA 1086 0.4291 MEAAVVDPGSSLLKAGFAIPDQTPPMIIPSQMKSMLDDGSVTDNPTFDEVAVDPVCRGYVRDWDAMEDLLHYVLYTGLGWEIGNEGQILFTDPLCNPKANKEQLVQLMFETFNISGFYASEQAVLSLYSVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGIDLTNFLAQELGKSNPRVNISISDVEKIKQLYSCCAEDELAYQQTQDSCPAETHTLPDGQVITIGRERYTIGEALFQPCLLGLEAHGIIDQLVRTISNVSSDNHRQLLENTVVCGGTSAMTGFEERFQKESSLSSSAIRPTLVKPPEYMPENLTVYSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHRKCF* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0238 361 Gene3D - 5 355 - -
Pvu5g0238 361 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Pvu5g0238 361 CDD NBD_sugar-kinase_HSP70_actin 4 168 - -
Pvu5g0238 361 PANTHER ACTIN 1 360 IPR004000 -
Pvu5g0238 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Pvu5g0238 361 PANTHER BNACNNG31150D PROTEIN 1 360 - -
Pvu5g0238 361 Gene3D - 123 324 - -
Pvu5g0238 361 PRINTS Actin signature 23 32 IPR004000 -
Pvu5g0238 361 PRINTS Actin signature 100 113 IPR004000 -
Pvu5g0238 361 PRINTS Actin signature 125 144 IPR004000 -
Pvu5g0238 361 PRINTS Actin signature 217 233 IPR004000 -
Pvu5g0238 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
Pvu5g0238 361 SMART actin_3 1 361 IPR004000 -
Pvu5g0238 361 Pfam Actin 2 361 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0238 Pvu-Chr5 2016114 2021494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0238 5 361 Cytoskeleton Gene Families AT3G12110 36.702 1.88e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0238 K16615 - gmx:100794153 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0238 5 2016114 2021494 Pvu5g0238 5 2016114 2021494 ECH