Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0222 ATGTCCAAGCCACCCTCCGCCTTGGACTTTCTAATGTCCGTCGCCGCCGCCGCCGCCGCCGTCAAGAAGAATTCCCAGTCCAAACCCCAAACACCCAAACTTTCATCATCCCTCAAGAAAAGAAAATCCCCAAACTCCACTTCCGTCGCCAAGAAAAGAAAATCCCCACACTCCACTTCCTCACAAAACCCTACTGTTAAACCGGAACAGGTTCTTAAACCGAAAGAAGTTCTTAAACCGGAAGAAGTTCTTAAAGCAGAAGAAGCGGTTAAAGCAGAAGAAGTCGTGGAGATGGAGAAGCAAGTGCAGCAGTTGAGGCAGAAACCCTCGAGTTTCGATCCCGCTTCGGTGACTGCATGGGAGAAGGGACAGCCAGTGCCGTTTCTCTTTCTCGCCTTGGCATTTGATATGATTGATGAGGAAACCAGCAAAACTGTTATAACTGACATTGCTTGCAATATGCTGCGGACTGTTATGGTCGTCACGCCGGAGGATCTTGTTCCCATCGTTTACCTCTCCGCCAGCCGGATTGCGCCTCCTCATGAAGGGTTGGAGTTGGGAATCGGCGACTCGATCATTATCAAGACATTCGCGGAGGCCTATGGAAAGGAGGAGGAGTTAATTAGGACTCAGTATCAGAAAAAGGGGGATTTGGGCTTGCTTGTTAAAGAGAGCCGTTCGTCTCAATCTACCATTTCTCAATATTATAAGCCGCAGAAGCCTCCTGAAGCATTGACCATTAGGAAGGTTTTCAACACTTTTCGCCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAAATAAAAAAGAACCATATCAAGGCACTTCTTGTTGCTGCAACTGAGTGTGAACCTCAATATCTAATTCGTTTGCTTCAGGCGAAGTTGCGAATTGGTTATGCAGAGCAAACTCTATTGGCTGCATTAGGCCAAGCTGCAGTATACAGTGAAGAACACTCTAGACCACCTCCTCATTTTCTTTCCTATTATATATATATATATATGTGTGCTTCGGATATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTAGAGAGGGTCTATGGATGCTTCCAAAGAAATTTTTAAAATTTACCCCTGGTGTTCCAATTAGACCTATGCTGCCAAAGGCAGTAAAAACTGTACCTGAAATTCTAAAAAAATTCCAGGGTGTGGAGTTTACCTGTGAATACAAATATGACGGAGAGCGTGCCCAGATACATTATCTGGAGAATGGTAAAGTTGAGATTTACAGTAGACAAGAAGAACGGAACACTGAGAAGTTTCCTGATGTTATTGAGGCAGTTTCAAGGTAG 1341 0.4422 MSKPPSALDFLMSVAAAAAAVKKNSQSKPQTPKLSSSLKKRKSPNSTSVAKKRKSPHSTSSQNPTVKPEQVLKPKEVLKPEEVLKAEEAVKAEEVVEMEKQVQQLRQKPSSFDPASVTAWEKGQPVPFLFLALAFDMIDEETSKTVITDIACNMLRTVMVVTPEDLVPIVYLSASRIAPPHEGLELGIGDSIIIKTFAEAYGKEEELIRTQYQKKGDLGLLVKESRSSQSTISQYYKPQKPPEALTIRKVFNTFRLIAKESGKDSQEIKKNHIKALLVAATECEPQYLIRLLQAKLRIGYAEQTLLAALGQAAVYSEEHSRPPPHFLSYYIYIYMCASDIVKQVYSVLPDYDKIISALLREGLWMLPKKFLKFTPGVPIRPMLPKAVKTVPEILKKFQGVEFTCEYKYDGERAQIHYLENGKVEIYSRQEERNTEKFPDVIEAVSR* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0222 446 Pfam ATP dependent DNA ligase domain 381 445 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pvu5g0222 446 PANTHER DNA LIGASE 1 23 445 - -
Pvu5g0222 446 MobiDBLite consensus disorder prediction 23 68 - -
Pvu5g0222 446 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 23 445 - -
Pvu5g0222 446 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 339 444 - -
Pvu5g0222 446 Coils Coil 88 108 - -
Pvu5g0222 446 Gene3D - 101 380 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu5g0222 446 MobiDBLite consensus disorder prediction 21 74 - -
Pvu5g0222 446 Pfam DNA ligase N terminus 127 309 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu5g0222 446 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 405 413 IPR016059 GO:0003909
Pvu5g0222 446 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 109 368 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu5g0222 446 Gene3D DNA ligase/mRNA capping enzyme 381 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0222 Pvu-Chr5 1827988 1830702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0222 2 446 Core DNA Replication Machinery Family AT1G08130 52.967 4.78e-149 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0222 K10747 - pvu:PHAVU_005G021200g 804.668