Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0221 GTTTATGGCGCCTTCCTCCTGGCTTGCTATGACAACAATAATGAAGAATTTCAAAGTATTTGCAAGATTGGAACGGGATTTGCAGATTCTGATCTTGTAGAACGTTCTTCCAGTCTTCGTTCTAAAGTGATTTCCAGGCCAAAGTCATACTATAGATTTGGAGAAACAATGAATCCTGATGTGTGGTTTGAAGCCAGTGAGGTGTGGGAAGTGAGAGCGGCAGAGCTGACCATTAGCCCTGTCCACCGTGCTGCAGCGGGCATAGTTGATCCCAACAAGGGCATATCTCTTCGATTTCCACGACTAATTCGACTCCGGCATGACAAAGCTCCTGAACAGGCCACATCAGCTGAGCAGGTTGCTGAGTTGTATAAAGCTCAAGCCAACAATCAAGCCAACGAACAAGATGAAGAAGATTATTGA 423 0.4539 VYGAFLLACYDNNNEEFQSICKIGTGFADSDLVERSSSLRSKVISRPKSYYRFGETMNPDVWFEASEVWEVRAAELTISPVHRAAAGIVDPNKGISLRFPRLIRLRHDKAPEQATSAEQVAELYKAQANNQANEQDEEDY* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0221 140 CDD OBF_DNA_ligase_I 1 126 - -
Pvu5g0221 140 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 1 139 - -
Pvu5g0221 140 SUPERFAMILY Nucleic acid-binding proteins 2 127 IPR012340 -
Pvu5g0221 140 PANTHER DNA LIGASE 1 1 139 - -
Pvu5g0221 140 Pfam ATP dependent DNA ligase C terminal region 2 109 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pvu5g0221 140 Gene3D - 1 128 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0221 Pvu-Chr5 1822825 1823561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0221 1 139 Core DNA Replication Machinery Family AT1G08130 72.143 3.60e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0221 K10747 - pvu:PHAVU_005G021100g 283.878