Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu5g0210 | ATGGCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCAGTGTGCTTTTGTTCATGAGAAAAAGGATGAAGATAGTGGTCATGTTTGTTGCTTTCATAGAAAAGGAGTATGTGCTTTTGGTAGTAAATGCAAATATAAACATGTCAGAGCTTCTGATGGGTCGTCTTCATCTAACAGACGTCGTTCTCCTCTTCCGAAATGTTTGCTGAATCGTACCGCCAAAGAAACAAGTTGGGTTCCAAAGGGTTCAAAGTCATCTTCATCAGACAATTGTGCAAGGAGTTCACAACATAAGAATCTGCTCTCTCCTGGAAATGATGTTGGCAGTTCTAGTAATGCTGCACGATCTGAAATTTTGTTCTGCTCATTTGCTGCTGCCGACTGCCCCCTTGGATTTAACTGTTCTCGTGTTCATGGAAATCGATGTTTATACTGTAGAGAATTTTGCATACATCCTACTGACAGAGAGGAAAGAGAAAATCATTTGAGAACTTGTGATAAAAAGGAAAAATACCTTCAGGCTTTGAATGACAGTCAAGAAGTAGAATGCAATGTTTGTTTGGAGCGTGTTCTTTCCAAGGCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTGAATGTGATCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAGTAGTGCCCCAACCTCTGCAATGGACATGGGTAGTAGTAGTGGCACTGCTAATGCAGTGAGAACATGTCCTGTTTGTCGCAAACTGTCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAAGAAATTATTGATAACTACAAGGCAAACTGCAAACTAATTAATTGCAAGCATTTTAACTTCGGAAATGGGAATTGTCCATTTGGGGCTAGTTGCTTCTACAAGCACACTGTGAAGCCTGGCTCATACACATGGATCCATCGCAGGCCACCACCACACCGGAGACAAAACAATATTACGATGAATGAGATGAATGACATGTTGGAGATGCTCAGCGATGTTGATTTAACAAATTCTATTATGAGGGACTCAGGGTTTTTCGATGATATGGATCCATTTGGGATGATGGATATATCTGATAGTCTTGGTGGTGAATCAGGTCCTTGTTTTGGCCCTTTTGATTCTGATGAAGAAGACACAGATTTTTTTCAGATGGCTGCATTGTCAGAAGCACTGGTTTCTGGTGTGGATGATTTTGGCCCTGAAGATTTTGTGGATGAAGAATTCAACCCTATGGAGGCTGCCTTGTTATCAATGATGATGCATTCTAATATAGATGATGATGATGATGAAGAGGAATACAGTGATGAGTTCTACTAG | 1356 | 0.4078 | MANRVCKFYARGACLKGDQCAFVHEKKDEDSGHVCCFHRKGVCAFGSKCKYKHVRASDGSSSSNRRRSPLPKCLLNRTAKETSWVPKGSKSSSSDNCARSSQHKNLLSPGNDVGSSSNAARSEILFCSFAAADCPLGFNCSRVHGNRCLYCREFCIHPTDREERENHLRTCDKKEKYLQALNDSQEVECNVCLERVLSKAKPSDCKFGLLPECDHAFCLSCIRNWRSSAPTSAMDMGSSSGTANAVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLINCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHRRPPPHRRQNNITMNEMNDMLEMLSDVDLTNSIMRDSGFFDDMDPFGMMDISDSLGGESGPCFGPFDSDEEDTDFFQMAALSEALVSGVDDFGPEDFVDEEFNPMEAALLSMMMHSNIDDDDDEEEYSDEFY* | 452 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu5g0210 | 451 | SMART | c3hfinal6 | 282 | 310 | IPR000571 | GO:0046872 | |
Pvu5g0210 | 451 | SMART | c3hfinal6 | 2 | 26 | IPR000571 | GO:0046872 | |
Pvu5g0210 | 451 | SMART | c3hfinal6 | 30 | 55 | IPR000571 | GO:0046872 | |
Pvu5g0210 | 451 | Pfam | Zinc finger, C3HC4 type (RING finger) | 189 | 252 | IPR018957 | GO:0046872 | |
Pvu5g0210 | 451 | ProSitePatterns | Zinc finger RING-type signature. | 213 | 222 | IPR017907 | - | |
Pvu5g0210 | 451 | CDD | RING-HC_MKRN | 189 | 253 | - | - | |
Pvu5g0210 | 451 | SMART | ring_2 | 189 | 252 | IPR001841 | - | |
Pvu5g0210 | 451 | MobiDBLite | consensus disorder prediction | 84 | 113 | - | - | |
Pvu5g0210 | 451 | SUPERFAMILY | RING/U-box | 180 | 259 | - | - | |
Pvu5g0210 | 451 | ProSiteProfiles | Zinc finger C3H1-type profile. | 282 | 311 | IPR000571 | GO:0046872 | |
Pvu5g0210 | 451 | SUPERFAMILY | CCCH zinc finger | 3 | 25 | IPR036855 | GO:0046872 | |
Pvu5g0210 | 451 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 165 | 292 | IPR013083 | - | |
Pvu5g0210 | 451 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 27 | IPR000571 | GO:0046872 | |
Pvu5g0210 | 451 | ProSiteProfiles | Zinc finger RING-type profile. | 189 | 253 | IPR001841 | - | |
Pvu5g0210 | 451 | PANTHER | MAKORIN RING-ZINC-FINGER PROTEIN | 1 | 449 | - | - | |
Pvu5g0210 | 451 | PANTHER | MAKORIN-RELATED | 1 | 449 | IPR045072 | - | |
Pvu5g0210 | 451 | Gene3D | - | 1 | 108 | - | - | |
Pvu5g0210 | 451 | ProSiteProfiles | Zinc finger C3H1-type profile. | 34 | 56 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu5g0210 | Pvu-Chr5 | 1731748 | 1738771 | Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Pvu5g0210 | zf-C3HC4 | 9e-07 | CL0229 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu5g0210 | K15687 | - | gmx:100788886 | 665.611 |