Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0210 ATGGCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCAGTGTGCTTTTGTTCATGAGAAAAAGGATGAAGATAGTGGTCATGTTTGTTGCTTTCATAGAAAAGGAGTATGTGCTTTTGGTAGTAAATGCAAATATAAACATGTCAGAGCTTCTGATGGGTCGTCTTCATCTAACAGACGTCGTTCTCCTCTTCCGAAATGTTTGCTGAATCGTACCGCCAAAGAAACAAGTTGGGTTCCAAAGGGTTCAAAGTCATCTTCATCAGACAATTGTGCAAGGAGTTCACAACATAAGAATCTGCTCTCTCCTGGAAATGATGTTGGCAGTTCTAGTAATGCTGCACGATCTGAAATTTTGTTCTGCTCATTTGCTGCTGCCGACTGCCCCCTTGGATTTAACTGTTCTCGTGTTCATGGAAATCGATGTTTATACTGTAGAGAATTTTGCATACATCCTACTGACAGAGAGGAAAGAGAAAATCATTTGAGAACTTGTGATAAAAAGGAAAAATACCTTCAGGCTTTGAATGACAGTCAAGAAGTAGAATGCAATGTTTGTTTGGAGCGTGTTCTTTCCAAGGCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTGAATGTGATCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAGTAGTGCCCCAACCTCTGCAATGGACATGGGTAGTAGTAGTGGCACTGCTAATGCAGTGAGAACATGTCCTGTTTGTCGCAAACTGTCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAAGAAATTATTGATAACTACAAGGCAAACTGCAAACTAATTAATTGCAAGCATTTTAACTTCGGAAATGGGAATTGTCCATTTGGGGCTAGTTGCTTCTACAAGCACACTGTGAAGCCTGGCTCATACACATGGATCCATCGCAGGCCACCACCACACCGGAGACAAAACAATATTACGATGAATGAGATGAATGACATGTTGGAGATGCTCAGCGATGTTGATTTAACAAATTCTATTATGAGGGACTCAGGGTTTTTCGATGATATGGATCCATTTGGGATGATGGATATATCTGATAGTCTTGGTGGTGAATCAGGTCCTTGTTTTGGCCCTTTTGATTCTGATGAAGAAGACACAGATTTTTTTCAGATGGCTGCATTGTCAGAAGCACTGGTTTCTGGTGTGGATGATTTTGGCCCTGAAGATTTTGTGGATGAAGAATTCAACCCTATGGAGGCTGCCTTGTTATCAATGATGATGCATTCTAATATAGATGATGATGATGATGAAGAGGAATACAGTGATGAGTTCTACTAG 1356 0.4078 MANRVCKFYARGACLKGDQCAFVHEKKDEDSGHVCCFHRKGVCAFGSKCKYKHVRASDGSSSSNRRRSPLPKCLLNRTAKETSWVPKGSKSSSSDNCARSSQHKNLLSPGNDVGSSSNAARSEILFCSFAAADCPLGFNCSRVHGNRCLYCREFCIHPTDREERENHLRTCDKKEKYLQALNDSQEVECNVCLERVLSKAKPSDCKFGLLPECDHAFCLSCIRNWRSSAPTSAMDMGSSSGTANAVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLINCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHRRPPPHRRQNNITMNEMNDMLEMLSDVDLTNSIMRDSGFFDDMDPFGMMDISDSLGGESGPCFGPFDSDEEDTDFFQMAALSEALVSGVDDFGPEDFVDEEFNPMEAALLSMMMHSNIDDDDDEEEYSDEFY* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0210 451 SMART c3hfinal6 282 310 IPR000571 GO:0046872
Pvu5g0210 451 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Pvu5g0210 451 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Pvu5g0210 451 Pfam Zinc finger, C3HC4 type (RING finger) 189 252 IPR018957 GO:0046872
Pvu5g0210 451 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Pvu5g0210 451 CDD RING-HC_MKRN 189 253 - -
Pvu5g0210 451 SMART ring_2 189 252 IPR001841 -
Pvu5g0210 451 MobiDBLite consensus disorder prediction 84 113 - -
Pvu5g0210 451 SUPERFAMILY RING/U-box 180 259 - -
Pvu5g0210 451 ProSiteProfiles Zinc finger C3H1-type profile. 282 311 IPR000571 GO:0046872
Pvu5g0210 451 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Pvu5g0210 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 292 IPR013083 -
Pvu5g0210 451 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Pvu5g0210 451 ProSiteProfiles Zinc finger RING-type profile. 189 253 IPR001841 -
Pvu5g0210 451 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 449 - -
Pvu5g0210 451 PANTHER MAKORIN-RELATED 1 449 IPR045072 -
Pvu5g0210 451 Gene3D - 1 108 - -
Pvu5g0210 451 ProSiteProfiles Zinc finger C3H1-type profile. 34 56 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0210 Pvu-Chr5 1731748 1738771 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu5g0210 zf-C3HC4 9e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0210 K15687 - gmx:100788886 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0210 5 1731748 1738771 Pvu5g0210 5 1731748 1738771 ECH