Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0200 ATGAGCAACAACCCCTCCCGAAAGCGTGCGGCGGCGCCGTTGCAACCTCCGCCGGCGAAGCAAGTCTTAATGATTCAGGAAGAGGAGTTCATGGACGAAGACGTGTTTACGGAGCAAACCCTCGGCGACATCGATCAAACTCTCTGCGACATCGAGCAGCGCCAGACTCTCGCTGCTCGCCTATCCAAGTGGGAGCGTCCTCCTCTCTCCGCCGATTACGTCGCACACTCTCGTAGCGTCGTTTTTCAGCAGCTGGAGATTGATGATGTGATCGGGGAGAGTCACAGAGAGTTGCTGCCCAACTTGTTTGGACCTGCTGCCATTGTCAGAATCTTTGGAGTTACGAAGGAAGGACACAGTGTTTTCTGCAATGTTCATGGGTTTGAACCATATTTCTACATCTGTTGCCCTCCTGGAATGGGTCCAGATGATATCTCTCATCTTCACCAAACACTTGAGGGAAGGATGAGACAAGCCAATAGAAATAGTAACGTAGGAAAATTCATTCGCCGCATTGAAATGGTGCAGAGGAGAAGTATTATGTACTATCAGCAATCTGATTCCCAGCCCTTTCTCAAAGTTGTAGTTGCACTTCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGCGGTATTAAGCTCGATGGTCTGGGAATGAAGAGCTTCTTGACTTATGAAAGCAATGTACTTTTTGCCCTGCGGTTCATGATTGATTGCAACATAGTAGGTGGAAATTGGATTGAAATTCCAGCAGGAAAATATAAGAAGATAGCGAAAAGCTTGTCTTATTGCCAGTTGGAGTTTGATTGCCTGTATTCTGATTTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCATTTCGTATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTAGCCATGATCCTGTTATCCAGATTGCTAATTTGGTTACTTTACAAGGAGAAGACCAGCCACTTATTCGCAATGTGATGACCCTTAAATCATGCTCTCCTATTGTTGGTGTTGATGTGATGTCATTTGATACGGAAAGAGAAGTCCTGCTAGCTTGGAGGGATTTAATTCTGGAAGTGGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCCAAAAACCTGAAGATAGCAGAATTTCAAATTCTTGGCCGTATTAGGAACAGTAGAGTTTGGGTAAAGGATACAACTTTCTCGTCAAGGCAGTACGGGACCAGGGAAAGCAAAGAAGTTACAGTAGAAGGGAGAGTTCAGTTTGACTTACTCCAGGTTATGCAGAGAGACTACAAATTAAGTTCTTATTCACTAAATTCTGTCTCAGCACACTTCCTTTCTGAGCAGAAAGAGGATGTCCACCATTCTATCATATCTGATCTCCAGAATGGAACCGCAGAAACAAGGAGGCGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAGCGGCTTTTGGATAAATTGATGTTGATTTACAACTATGTGGAAATGGCTCGAGTTACAGGTGTTCCAATTTCCTTTCTACTTTCCAGAGGCCAAAGCATTAAGGTACTTTCACAACTTCTTAGGAAGGCAAGACAGAAGAATCTGGTCATTCCTAATGTCAAACAGGTTGGGTCTGAACAAGGAACATTTGAAGGTGCCACAGTATTGGAGGCAAAGGCTGGATTTTATGAAAAACCAATTGCTACGTTAGATTTTGCATCCCTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTGACTTCTGAAGATGCTCGCAAGCTTAACATCCCTCCAGAATCCGTGACCAGAACTCCATCTGGTGAAACATTTGTTAAATCAAATCTGCAAAAGGGAATACTTCCTGAAATACTTGAAGAGCTATTAACAGCCCGAAAAAAGGCAAAAGCAGACTTAAGGGAGGCAAATGATCCCCTGAAGAGGGCAGTGCTAGATGGTAGGCAGCTGGCCCTGAAAATTAGTGCAAATTCTGTGTATGGATTTACTGGGGCTACCATTGGTCAGTTACCATGTTTGGAGATATCATCGAGTGTAACAAGCTATGGTCGACAGATGATTGAGCACACAAAAAAACTTGTGGAAGATAAATTTAGAACACTTAATGGCTATAAACACGATGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTGATGCAAAAGAGGGTGTTTCTGCTGTAGAACAGGCTATGAACTTGGGGAGAGAAGCTGCCGAATATATAAGTGAAACTTTCACAAAACCCATCAAACTAGAATTTGAGAAGGTTTATTATCCATATCTATTGATTAGCAAGAAGAAATATGCTGGTTTGCTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGTTTGTTGGTAAAAAACCTGGTGAATGATTGTCTTCACAAAATACTGATTGATAGGGACACAAAGGGGGCTGTCCAGTATGTCAAGAACACAATTTCAGATCTTCTCATGAATCGAATAGATTTATCTCTGCTGGTTATTACAAAGGGTTTAACAAAGACACGAGATGAGTACAAAGTAATGGCAGCTCATGTTGAACTTGCTGAAAGGATGCACAAGCGAGATGCTGCCACTTCTCCAAATGTTGGAGATAGAGTACCTTATGTAATTATCAAAGCTCCAGAAGGTGCAAAGGCGTATGAGAAATCAGAGGACCCTATTTATGTTCTAGAAAACAACATACCTATAGATACTAAATACTATCTTGAGAACCAAATTAGCAAGCCGATTCTGAGAATTTTTGAGCCAATTATCCGGAATGCTAGCAGAGAACTTTTCCATGGAGATCATACAAGATCTATTTCAATTTCTACTCGATCAAACAATAGCACATTGAAATTTCCTAAACAGCTTACCTGCATTGGCTGTAAAGCTGTACTAGGCAAGGATCATCACACTGTCTGTTCAGATTGCAAAGGAAGGGAAAATGAGCTATACTGTAAAACAGTATCTCAAGTGTCTGAGCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAAGATGTTCTCTGCACAAGTCGGGATTGTCCAATTTTTTATCGACGAAAAAAGGCACAGAATGATATGTCCGAAGCAAAATCGCAATTGGACCGGTGGAGCTTTTAA 3267 0.419 MSNNPSRKRAAAPLQPPPAKQVLMIQEEEFMDEDVFTEQTLGDIDQTLCDIEQRQTLAARLSKWERPPLSADYVAHSRSVVFQQLEIDDVIGESHRELLPNLFGPAAIVRIFGVTKEGHSVFCNVHGFEPYFYICCPPGMGPDDISHLHQTLEGRMRQANRNSNVGKFIRRIEMVQRRSIMYYQQSDSQPFLKVVVALPTMVASCRGILDSGIKLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKIAKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPSHDPVIQIANLVTLQGEDQPLIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDLILEVDPDIIIGYNICKFDLPYLIERAKNLKIAEFQILGRIRNSRVWVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGTAETRRRLAVYCLKDAYLPQRLLDKLMLIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVIPNVKQVGSEQGTFEGATVLEAKAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTSEDARKLNIPPESVTRTPSGETFVKSNLQKGILPEILEELLTARKKAKADLREANDPLKRAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFRTLNGYKHDAEVIYGDTDSVMVQFGVSDAKEGVSAVEQAMNLGREAAEYISETFTKPIKLEFEKVYYPYLLISKKKYAGLLWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDTKGAVQYVKNTISDLLMNRIDLSLLVITKGLTKTRDEYKVMAAHVELAERMHKRDAATSPNVGDRVPYVIIKAPEGAKAYEKSEDPIYVLENNIPIDTKYYLENQISKPILRIFEPIIRNASRELFHGDHTRSISISTRSNNSTLKFPKQLTCIGCKAVLGKDHHTVCSDCKGRENELYCKTVSQVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQNDMSEAKSQLDRWSF* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0200 1088 SUPERFAMILY Ribonuclease H-like 107 528 IPR012337 -
Pvu5g0200 1088 Pfam C4-type zinc-finger of DNA polymerase delta 998 1069 IPR025687 -
Pvu5g0200 1088 Pfam DNA polymerase family B, exonuclease domain 115 458 IPR006133 -
Pvu5g0200 1088 SMART polmehr3 289 748 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu5g0200 1088 CDD POLBc_delta 563 963 - -
Pvu5g0200 1088 Gene3D - 290 508 IPR036397 GO:0003676
Pvu5g0200 1088 TIGRFAM pol2: DNA polymerase (pol2) 543 960 - -
Pvu5g0200 1088 Gene3D - 817 972 IPR042087 -
Pvu5g0200 1088 Gene3D DNA Polymerase, chain B, domain 1 100 260 - -
Pvu5g0200 1088 Pfam DNA polymerase family B 522 962 IPR006134 GO:0000166|GO:0003677
Pvu5g0200 1088 Gene3D Helix hairpin bin 637 689 - -
Pvu5g0200 1088 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 78 1087 - -
Pvu5g0200 1088 Gene3D Palm domain of DNA polymerase 564 800 IPR023211 -
Pvu5g0200 1088 PRINTS DNA-directed DNA-polymerase family B signature 581 594 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu5g0200 1088 PRINTS DNA-directed DNA-polymerase family B signature 673 685 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu5g0200 1088 PRINTS DNA-directed DNA-polymerase family B signature 734 742 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu5g0200 1088 CDD DNA_polB_delta_exo 285 514 - -
Pvu5g0200 1088 ProSitePatterns DNA polymerase family B signature. 736 744 IPR017964 GO:0000166|GO:0003676
Pvu5g0200 1088 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 78 1087 - -
Pvu5g0200 1088 SUPERFAMILY DNA/RNA polymerases 547 965 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0200 Pvu-Chr5 1652530 1669257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0200 7 1088 Core DNA Replication Machinery Family AT5G63960 76.742 0.0 1762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0200 K02327 - gmx:100817379 1929.45