Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0171 ATGGCTCCGAAGAGGAAGAAACTCAATCCTCAGCAACCTTCCAAGTTCGGCATCCAGCACTTCTTCGATCGCGCTTCTCAGAAACCCCACCACCACCTTCAACCCCACACCACCACCGCCGCCGCCGTCACCGCCGCCGATACCACCACATCCACCACCATCGATTCACCACAAGAACCCGACGAAGTGTCTCCGCAGACGCGCTTCAACTTCTCACCTGGAATGTTAGTGAAGCAGAGCCAGGACGACGCCGTCAACGAGGTCACCTGGAAAATATCTCCCGTGAATGAGAGGCTTCAGGCAGTTTCCAAACACACGCCTGAAGTGATCAAAGCTTTGGCTGCCTCTTCCAAAATGAACTTGTCGCCAATTCGCAGTCACAGCGGCAAGGAGACTTGTCTGGACAAGGTTGCTTCGCCAACTCTCAAGGTGCCGTTGAGCTTCAAGAGGATAACCTCGGCCCCTGATGTGATTGGACAGAGTCCCTTCAGAACTCCACCTTCTTTGTCTTATCGCCCTGACAAGGTGCAGCGTGGCAAGGATATTGAACACAAGGGACCGTGCGACCAACCTTTATTAAGACAGAACAAAAAGGCATTGCTTGAACTCTTAGATCAAGTTGAAGATGCCATTACTGTTGATGATGCTCCAGTTTGCCACAGCAACACCTATTCCTTTAAAGTACCTCAAAATCAAGCTAATGAGCTCCCTGTCAAAGTCAAACCTGCAGTAGAAAGGACCAAATCACATTTACCTAAAGAGGTTGTTGATGTCTTCACCAATTCTAATTATTTGGTTCTGGAGGTATCTGAACATAGGTCTGCTGATTCAAATGGTGCTCAATGCTCATACAAGGTGCTACGTTTGCTAAATGAACAAACTGGGGAAGAGCGGGCTGTAAACTTACAGAATGAGTGGTATTGTAGTGTAATTGCACCTGGAGATACTGTGCACGTAATTGGTGAATTTGATGAAAGGGGGAATTGTGAAATTGATCATGATAACAATTTTTTGATTGTACACCCAGATATTCTATTGTCTGGAACTCGGGTTTCTTCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGACGAGAGGCTGAAAAACAATGATTACTCAACTGCAGCATTAGCTGGAACAATGCTGCACCAAATTTTCCAGGCTGGGCTTACAAAAGACCATCCTACAGTAAATTTCATGGAAGATTATGCTGAAGTGGTATTGCAGAAAAACATTGAAAGTTTGTATGCATGTGGAGTTAATGAAAACGACGTTCGCAAAACCATGAGAGATGCTATTCCTAGAATATTAAGTTGGATCATGCGGTTTAAAAATACGGAGGAAAGAAAAGACCCGAATGTCAAATTTGGATTTGATAATGGGCCAAAGAATGTTAGCATATCTGAGGTAATTGATATTGAAGAGATGGTGTGGGCTCCAAAATATGGTTTAAAAGGGATGATTGATGCTTCGGTCAGAGTGAAAATTCAATCACAAAAAGATCAACAGGAGGAAAAGATTATGCCATTAGAGTTCAAAACTGGAAAAACACCAAATAGCCAGTCATCAGTTGAACACAGTGCCCAAGTAATTTTGTACACTCTCTTGATGTCTGAAAGGTATCAGACGACTGTTGATTCTGGTCTTCTATATTATCTTCAATCTGATCAGACACAGGGCATCGTGGTTCAAAGATCTGACCTAACTGGGCTAATAATGCAACGAAATGAACTAGCAAGTTATATTCTTAAGGCATTGACTCTACAACAACTTCCTCCAATGTTACAGAGTCCTCACATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTAGCGTTTATCACAAGGCAAATGGTGGAAGCACAGAGAGCAGTGGGTTGGGAGAGGTTTTTGATTCTCTTACTAATCACATGACTTCTTCGCATTTTAAGTTTCTCCGCCAATGGGATCGATTGATTGACTTAGAAGCTAAAGAGACTGAGATTTTAAGGAAAGAGGTGTGGCAATCACATGGTTCAAACAATAGTGGTCTTTCTTCCATTGTTCTTGATGACTCACTAGGAATACCTCTTGAGAAATCTTTCAAAGATGACCAATTCACTTATCGTTTCATACAACAAGATTCTTCTTCTAACCTCTCTGAAGTTTCTAATGTGTCTTCTAGTGCCCCATTGAAAAATCATTTAGATTTCACACTTCGAAGTGGAGATCATGTGATACTGGGTAATCAATCTAGCCATCAAATTATTGCTAAAGGGGTGATATCTGATATTAGTCCGATCCATGTATCTGTTTCCTTTCCTAAGCGTTTACGAATTCCCGGGAGTTCTTCCACAGCACATGATCTCATTCAGCAGGTTTGGAGAATTGACAAGGATGCAGCTGTGACTTCCTTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCGAAGTGCTCATTTGCGGAGGATGATTGTTGATCTTGAGGCTCCTAGATTTGACAGTGGATCTGTACTTAGTCAGGATCCTGCGATATCCTATGTTTGGTCAGAGAAGAGTTTGAATTATGACCAACGTAGAGCAATTCTCAAGATACTTACAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACGTCCACATTAGTCCATGCTGTGAAAGCCTTGTTGATTAGAAGGACATCCATTTTGCTAACAGCCTATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACAGGGGATTGATTTTGTACGAATTGGAAGACCCGAAGTAGTGAATGAGGTGGTCAGAGAACACTGCCTCTCAGCAATGAGTGTACAAGGTGTTGAAGATATCAAAAGAAGGTTGGAACAAGTCAAAGTTGTTGCAGTTACTTGTCTTGGCATTTCTAGTCCCTTGCTTGCCAACACAAGGTTTGATGTATGCATTATGGACGAAGCTGGACAGACAACTTTACCAGTGTCCTTGGGTCCTCTAACGTTTGCTTCGATGTTTGTACTTGTTGGGGATCATTATCAACTGCCACCACTTGTCCAGAGTACAGAAGCCCGAGAGAATGGCATGGGGATAAGTTTGTTCCGTAGGCTCTCAGAAGCACATCCGCAGGCTATTTTAGCCTTACAGAGTCAGTATCGTATGTGTCAGGAGATTATGGACCTTTCAAATGCCTTGATATATGGTGATAGATTGAGGTGTGGTTCAGTTGAGGTAGCTAATGCAAAACTTGAGTTTTCAGACTTAAGCTGTGACTTGCCTTGGCTAGAACATGTTTTGAATCCTCTAAGACCTGTTATATTTATTGATACTGACAAGTTGCCCGCATTAGAGGCAAGAGATCACAAGCTTGTAAATAATCCTACTGAAGCTCAGATAATTGCTGAGATTGCAAAAGAATTAGTTAAAAATGGAATCGGAGAAGAACACATTGGCATTATCACTCCATACAATTCACAGGCAAACGTCATCCGCGGTGCTGTTTGCATGACATCCTTGGAAATACATACTATTGACAAATACCAGGGTAGAGATAAGGACTGTGTGTTATTATCTTTTGTAAGATCCACGGAAAACCCAAGAAGCTATGCTGCGTCTCTGCTTGGAGATTGGCACAGGATGAATGTGGCTCTTACTCGTGCTAAGAAAAAGTTAATAATGGTAGGGTCTAGGAGAACTCTATCAAAGATTCCTTTACTGAAACTTCTTATTGACAAAGTTGAGGAGCAGTCTGGAATTTTAAGTGTCTCTCAGAAGGATATGTATAAAAAAGGCCAGCTCAAGAGATGTTCCCAACTGAGATGA 3813 0.4196 MAPKRKKLNPQQPSKFGIQHFFDRASQKPHHHLQPHTTTAAAVTAADTTTSTTIDSPQEPDEVSPQTRFNFSPGMLVKQSQDDAVNEVTWKISPVNERLQAVSKHTPEVIKALAASSKMNLSPIRSHSGKETCLDKVASPTLKVPLSFKRITSAPDVIGQSPFRTPPSLSYRPDKVQRGKDIEHKGPCDQPLLRQNKKALLELLDQVEDAITVDDAPVCHSNTYSFKVPQNQANELPVKVKPAVERTKSHLPKEVVDVFTNSNYLVLEVSEHRSADSNGAQCSYKVLRLLNEQTGEERAVNLQNEWYCSVIAPGDTVHVIGEFDERGNCEIDHDNNFLIVHPDILLSGTRVSSSFSCPRRTVLDERLKNNDYSTAALAGTMLHQIFQAGLTKDHPTVNFMEDYAEVVLQKNIESLYACGVNENDVRKTMRDAIPRILSWIMRFKNTEERKDPNVKFGFDNGPKNVSISEVIDIEEMVWAPKYGLKGMIDASVRVKIQSQKDQQEEKIMPLEFKTGKTPNSQSSVEHSAQVILYTLLMSERYQTTVDSGLLYYLQSDQTQGIVVQRSDLTGLIMQRNELASYILKALTLQQLPPMLQSPHICRGCRHLNVCSVYHKANGGSTESSGLGEVFDSLTNHMTSSHFKFLRQWDRLIDLEAKETEILRKEVWQSHGSNNSGLSSIVLDDSLGIPLEKSFKDDQFTYRFIQQDSSSNLSEVSNVSSSAPLKNHLDFTLRSGDHVILGNQSSHQIIAKGVISDISPIHVSVSFPKRLRIPGSSSTAHDLIQQVWRIDKDAAVTSFAIMRFNLVQLFLQNDRSAHLRRMIVDLEAPRFDSGSVLSQDPAISYVWSEKSLNYDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRRTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRPEVVNEVVREHCLSAMSVQGVEDIKRRLEQVKVVAVTCLGISSPLLANTRFDVCIMDEAGQTTLPVSLGPLTFASMFVLVGDHYQLPPLVQSTEARENGMGISLFRRLSEAHPQAILALQSQYRMCQEIMDLSNALIYGDRLRCGSVEVANAKLEFSDLSCDLPWLEHVLNPLRPVIFIDTDKLPALEARDHKLVNNPTEAQIIAEIAKELVKNGIGEEHIGIITPYNSQANVIRGAVCMTSLEIHTIDKYQGRDKDCVLLSFVRSTENPRSYAASLLGDWHRMNVALTRAKKKLIMVGSRRTLSKIPLLKLLIDKVEEQSGILSVSQKDMYKKGQLKRCSQLR* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0171 1270 Gene3D - 347 611 IPR011604 -
Pvu5g0171 1270 CDD DEXXQc_DNA2 850 1050 - -
Pvu5g0171 1270 Pfam AAA domain 1028 1227 IPR041679 -
Pvu5g0171 1270 CDD SF1_C_Upf1 1051 1244 IPR041679 -
Pvu5g0171 1270 Gene3D - 951 1048 IPR027417 -
Pvu5g0171 1270 Gene3D - 793 943 IPR027417 -
Pvu5g0171 1270 PANTHER DNA2/NAM7 HELICASE FAMILY 142 1245 IPR045055 -
Pvu5g0171 1270 MobiDBLite consensus disorder prediction 45 65 - -
Pvu5g0171 1270 Gene3D - 1049 1258 IPR027417 -
Pvu5g0171 1270 Pfam AAA domain 951 1018 IPR041677 GO:0004386
Pvu5g0171 1270 Pfam AAA domain 851 942 IPR041677 GO:0004386
Pvu5g0171 1270 Pfam Domain of unknown function DUF83 500 611 IPR022765 -
Pvu5g0171 1270 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2 142 1245 IPR026851 GO:0017108|GO:0017116|GO:0033567
Pvu5g0171 1270 Pfam DNA replication factor Dna2 292 494 IPR014808 -
Pvu5g0171 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 850 1234 IPR027417 -
Pvu5g0171 1270 Gene3D - 730 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0171 Pvu-Chr5 1429856 1446801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0171 12 992 Core DNA Replication Machinery Family AT1G08840 55.039 0.0 1068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0171 K10742 - gmx:100799415 2049.25