Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0170 ATGGCTTCTGCAAGTAACTCCAATCCAAATCCATATCCATGGACCCCTAAGGATTGTTCTCAAGGGATCTGCAGCATCTACTGTCCCCAGTGGTGTTACATAGTCTACTCTCCTCCTCCTCCTTCACTCTTCCTTGGTGGTGATTCTGATGATGACCCTTCAGCCTTTGAGTTCTCACCTCTCATAGTTGCTGTGATTGGAATATTAGCCAGCACTTTCATCTTGGTCACATACTACACCATAATCTCAAGGTTCTGCAGGAGAAGAACCATGCACTCCAATGATCTAGCAGAAGATGGGAGCAGTGAACTGGCTCAGGTTTCTTCTTCTTCTAACTCTGGTTTGGATGAGGCTCTCATCAAGTCCATCACAGTTTGCAAGTACACCAAAGGGGGAGGGGTGGTGGAGGGTCATGATTGTTCTGTTTGTTTGAGTGAGTTTGAGGAGAATGAGAGCTTGAGATTGTTGCCAAAATGCAACCATGCTTTTCATCTCCCTTGCATTGATACTTGGCTCAAATCTCATGCCTCTTGCCCCTTGTGCCGTTCCACCATCACCATTGTTTGTCCAAATCCAGCCATGGAACCACCACCAAGAGTCATTGTCAATGCCTTGGAATATCAGCAAAGAACTAGCCATGTTGTTGTTGTGGTTGCTCAGAGCTCTGAGCAACAGGGGAAGGTGGTAACTTTTGATTCTCACACTTTGAATCAGAGTGAAGGGTGA 726 0.4614 MASASNSNPNPYPWTPKDCSQGICSIYCPQWCYIVYSPPPPSLFLGGDSDDDPSAFEFSPLIVAVIGILASTFILVTYYTIISRFCRRRTMHSNDLAEDGSSELAQVSSSSNSGLDEALIKSITVCKYTKGGGVVEGHDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHASCPLCRSTITIVCPNPAMEPPPRVIVNALEYQQRTSHVVVVVAQSSEQQGKVVTFDSHTLNQSEG* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0170 241 Pfam Ring finger domain 139 182 IPR001841 -
Pvu5g0170 241 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 215 IPR044675 -
Pvu5g0170 241 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 11 215 - -
Pvu5g0170 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 187 IPR013083 -
Pvu5g0170 241 CDD RING-H2_PA-TM-RING 139 182 - -
Pvu5g0170 241 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Pvu5g0170 241 SUPERFAMILY RING/U-box 134 191 - -
Pvu5g0170 241 SMART ring_2 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0170 Pvu-Chr5 1424346 1426809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0170 4 185 C3H Transcription Factor Family AT3G03550 54.369 8.61e-67 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0170 - - gmx:102660020 388.267