Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu5g0170 | ATGGCTTCTGCAAGTAACTCCAATCCAAATCCATATCCATGGACCCCTAAGGATTGTTCTCAAGGGATCTGCAGCATCTACTGTCCCCAGTGGTGTTACATAGTCTACTCTCCTCCTCCTCCTTCACTCTTCCTTGGTGGTGATTCTGATGATGACCCTTCAGCCTTTGAGTTCTCACCTCTCATAGTTGCTGTGATTGGAATATTAGCCAGCACTTTCATCTTGGTCACATACTACACCATAATCTCAAGGTTCTGCAGGAGAAGAACCATGCACTCCAATGATCTAGCAGAAGATGGGAGCAGTGAACTGGCTCAGGTTTCTTCTTCTTCTAACTCTGGTTTGGATGAGGCTCTCATCAAGTCCATCACAGTTTGCAAGTACACCAAAGGGGGAGGGGTGGTGGAGGGTCATGATTGTTCTGTTTGTTTGAGTGAGTTTGAGGAGAATGAGAGCTTGAGATTGTTGCCAAAATGCAACCATGCTTTTCATCTCCCTTGCATTGATACTTGGCTCAAATCTCATGCCTCTTGCCCCTTGTGCCGTTCCACCATCACCATTGTTTGTCCAAATCCAGCCATGGAACCACCACCAAGAGTCATTGTCAATGCCTTGGAATATCAGCAAAGAACTAGCCATGTTGTTGTTGTGGTTGCTCAGAGCTCTGAGCAACAGGGGAAGGTGGTAACTTTTGATTCTCACACTTTGAATCAGAGTGAAGGGTGA | 726 | 0.4614 | MASASNSNPNPYPWTPKDCSQGICSIYCPQWCYIVYSPPPPSLFLGGDSDDDPSAFEFSPLIVAVIGILASTFILVTYYTIISRFCRRRTMHSNDLAEDGSSELAQVSSSSNSGLDEALIKSITVCKYTKGGGVVEGHDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHASCPLCRSTITIVCPNPAMEPPPRVIVNALEYQQRTSHVVVVVAQSSEQQGKVVTFDSHTLNQSEG* | 242 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu5g0170 | 241 | Pfam | Ring finger domain | 139 | 182 | IPR001841 | - | |
Pvu5g0170 | 241 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 11 | 215 | IPR044675 | - | |
Pvu5g0170 | 241 | PANTHER | RING-H2 FINGER PROTEIN ATL53-RELATED | 11 | 215 | - | - | |
Pvu5g0170 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 187 | IPR013083 | - | |
Pvu5g0170 | 241 | CDD | RING-H2_PA-TM-RING | 139 | 182 | - | - | |
Pvu5g0170 | 241 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 182 | IPR001841 | - | |
Pvu5g0170 | 241 | SUPERFAMILY | RING/U-box | 134 | 191 | - | - | |
Pvu5g0170 | 241 | SMART | ring_2 | 140 | 181 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu5g0170 | Pvu-Chr5 | 1424346 | 1426809 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu5g0170 | 4 | 185 | C3H Transcription Factor Family | AT3G03550 | 54.369 | 8.61e-67 | 208 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu5g0170 | - | - | gmx:102660020 | 388.267 |