Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0159 ATGTCTGAGAGAAATGAAAATAAAGGAAAGAGAATCATCATTGGTGTCTCAGCCTTATTCTTTATGGCTATAGTTGGGGTTGTCATATTTGGTATCAACCTTATTGATAATGGTTCAAATGGTGATAAAGAGAATATTGATAACAAAAAGAACCATGTTGCCTCCACCGTAAAAGCCGTCCAAAGTCTTTGTCATCCCACAAATTATGAGAAAGAATGTGAAGAAAGCCTCATAGCAGGGGCTGGAAACACCACAGATCCAAGAGAACTTGTCAAAATTGCCTTCAATATAACTATTACAAAAATTGGTGATAAACTCAAAGAAACTAATCTCTTGCATGACGTTGAGAAGGAGCCTAGAGCCAAGATGGCACTTGACACATGCAAACAACTCATGGATCTTTCAATTGGGGAGTTGTCAAGGTCAATTGATGGAATAAGCGAGTTTGAGCTGATAAATATCGAGAAAATCCTCATGAATATAAAAGTTTGGCTTAGTGGTGCAATTACATACCAAGACACTTGCTTGGATGGGTTTGATAATACCACTAGTGAAGCTGGTCAAAAGATGAAGGATTCATTAATGACAAGCATGCATATGAGTAGCAATGCTCTTGCCCTTGTAACAGAACTGGGTGATACTATTACAAATTTGAATGTCACACAATTACTCGGACGTCGCCTCCTTCAAGATTCTGAGTCACCTTCATGGGTTGATCATCAAGGACTACCCAATGCAAATACAAGTTTATTTAATCACAAGCTTAATGTGACAGTAGCTCAAGATGGTAATGGAGATTTCAAAAGCATTAATGAGGCACTGAAGCAAGTGCCTGAGAAAAATAAAAAGCCATTTGTGATCTACATCAAGGAGGGCACCTACCAAGAGTATGTTGAAGTTACAAAGGATATGACTCATGTGGTTTTCATTGGTGATGGTGGAAAAAAGACACGAATAATAGGAAACAAAAACTTCATTGATGGAATCAACACTTATAGAACTGCCACCGTTGCTATTCAAGGAGATTACTTTGTGGCCATCAACATGGGATTTGAGAACTTTGCTGGACCTCACAAACATCAGGCAGTGGCATTGAGAGTCCAAGCAGACAAGTCTATCTTCTACAATTGTTCAATGGATGGGTATCAAGATACACTTTATGTACACACCATGCGTCAATTCTATAGGGATTGCACCATTTCAGGTACCATCGACTTTGTGTTTGGAAATGCACTTGCTGTTTTCCAAAATTGCACTTTTGTGGTTCGAAAGCCAATGAAAAATCAACAATGCATTGTGACGGCACAAGGTAGAAAAGAGAAACAACAACCATCTGGAATAGTAATCCAAGGGGGGTCCATTGTGTCTGACCCTGAGTTTTACTCAGTAAGATTTGAGAATAAAGCTTACCTAGCTCGTCCATGGAAGAATTACTCTAGGACCATTATCATGGATACTAACATTGATGATTTGATTCATGCTGACGGGTATTTGCCATGGCAAGGACCAGAAGGCCCTACTGGTATGGATACTTGCTTTTATGCCGAGTATCACAATACTGGCCCTGGTTCAGACAAATCCAAGCGTGTGAATTGGTCTGGGATTTGGAATCTCAATTCAAAAGCCGCACATTCGTTTTCACCTTCTAAGTTCTTTCATGGAACTAACTGGATTCAGGTTACTGGGATTCCTTACTTCCCTGGCATCCCCAAACATTATAGGCACAAGAAGACGATACTTGACTGGTGA 1749 0.3974 MSERNENKGKRIIIGVSALFFMAIVGVVIFGINLIDNGSNGDKENIDNKKNHVASTVKAVQSLCHPTNYEKECEESLIAGAGNTTDPRELVKIAFNITITKIGDKLKETNLLHDVEKEPRAKMALDTCKQLMDLSIGELSRSIDGISEFELINIEKILMNIKVWLSGAITYQDTCLDGFDNTTSEAGQKMKDSLMTSMHMSSNALALVTELGDTITNLNVTQLLGRRLLQDSESPSWVDHQGLPNANTSLFNHKLNVTVAQDGNGDFKSINEALKQVPEKNKKPFVIYIKEGTYQEYVEVTKDMTHVVFIGDGGKKTRIIGNKNFIDGINTYRTATVAIQGDYFVAINMGFENFAGPHKHQAVALRVQADKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMKNQQCIVTAQGRKEKQQPSGIVIQGGSIVSDPEFYSVRFENKAYLARPWKNYSRTIIMDTNIDDLIHADGYLPWQGPEGPTGMDTCFYAEYHNTGPGSDKSKRVNWSGIWNLNSKAAHSFSPSKFFHGTNWIQVTGIPYFPGIPKHYRHKKTILDW* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0159 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
Pvu5g0159 582 PANTHER PECTINESTERASE 10 569 - -
Pvu5g0159 582 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Pvu5g0159 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 211 IPR006501 GO:0004857
Pvu5g0159 582 Pfam Plant invertase/pectin methylesterase inhibitor 59 207 IPR006501 GO:0004857
Pvu5g0159 582 Pfam Pectinesterase 256 554 IPR000070 GO:0030599|GO:0042545
Pvu5g0159 582 SMART PMEI_2 55 207 IPR006501 GO:0004857
Pvu5g0159 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 212 IPR035513 -
Pvu5g0159 582 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Pvu5g0159 582 PANTHER PECTINESTERASE 10 569 - -
Pvu5g0159 582 SUPERFAMILY Pectin lyase-like 254 568 IPR011050 -
Pvu5g0159 582 CDD PMEI-like_3 62 211 - -
Pvu5g0159 582 Gene3D - 254 570 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0159 Pvu-Chr5 1342919 1345044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0159 5 569 Carbohydrate Esterase AT3G05610 48.858 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0159 K01051 - gmx:100776244 1006.51