Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu5g0154 | ATGGCATCCTCGCATAATTTGGAAGATTATTCCTCTGAAGCCTCTAGCACCTCACAAAATATTTGCCATAAAGAAGAAGGGAAGAAGGACGAGGTGACAACAACGATGGAGAAGGGTATCAAATTTGAAGAAGGTCAGGTTTCTAATTCCAAACCTCAAATGGTGTTAGATTTTGCTAAGTTTTCCAATGATCAATCAATTTGTGGGTCAAAAGTGGAATTAGATTTTTTCAATCCAATAAATATCACGGGTTCATCTTCTAGGACAAATCACACTCAAGGGAGAGATGAGAACAACAAAGAAGAGAAATCATCAGAGGCTAAGACTTTTTCTTGCAATTTTTGTCAGAAAGAGTTTTCTTCTTCACAGGCACTGGGAGGACACCAAAATGCCCATAAACAAGAAAGAGCTCTTGCAAAGCGTCGTCAAGGAATTGATGGTGGTACTTTTGGGAACCCTCATATTCTCTATTATCCTTATCCCACACACTCCTTGTATGGATCTTATAATAGGGCACTTGGGGTTCGGATGGATTCCATGATTCACAAGCCTATGTATCCTTCATCCTCACTAGGTTTGAGGTTTGGTCAAGCATTGTCAAGACAAGAGATGATAAACTCTTCTTCTCTTGGTTTACGGGAAAATACCGGAATTAGGATTATGGGAAATGACACAATTTTGAGGAAACAAAATGATCATGGTACTACTAGAAACAATATTCCATTTCTTGGAGAATCTTCTACAAATATTACTACCAGATCAAATTTGACTCCATTGAATATAGAGGATAATGGTGATCACTCCAAAAAGGAAGAAATCTCGGATTCCACTTCTTCTGATGAAATTGATTTATCACTTAAACTTTAG | 867 | 0.3772 | MASSHNLEDYSSEASSTSQNICHKEEGKKDEVTTTMEKGIKFEEGQVSNSKPQMVLDFAKFSNDQSICGSKVELDFFNPINITGSSSRTNHTQGRDENNKEEKSSEAKTFSCNFCQKEFSSSQALGGHQNAHKQERALAKRRQGIDGGTFGNPHILYYPYPTHSLYGSYNRALGVRMDSMIHKPMYPSSSLGLRFGQALSRQEMINSSSLGLRENTGIRIMGNDTILRKQNDHGTTRNNIPFLGESSTNITTRSNLTPLNIEDNGDHSKKEEISDSTSSDEIDLSLKL* | 289 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu5g0154 | 288 | SUPERFAMILY | beta-beta-alpha zinc fingers | 107 | 137 | IPR036236 | - | |
Pvu5g0154 | 288 | MobiDBLite | consensus disorder prediction | 229 | 262 | - | - | |
Pvu5g0154 | 288 | Gene3D | Classic Zinc Finger | 86 | 146 | - | - | |
Pvu5g0154 | 288 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 110 | 137 | IPR013087 | - | |
Pvu5g0154 | 288 | MobiDBLite | consensus disorder prediction | 229 | 288 | - | - | |
Pvu5g0154 | 288 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Pvu5g0154 | 288 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Pvu5g0154 | 288 | PANTHER | AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED | 12 | 288 | - | - | |
Pvu5g0154 | 288 | MobiDBLite | consensus disorder prediction | 82 | 105 | - | - | |
Pvu5g0154 | 288 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 112 | 132 | IPR013087 | - | |
Pvu5g0154 | 288 | MobiDBLite | consensus disorder prediction | 263 | 277 | - | - | |
Pvu5g0154 | 288 | PANTHER | ZINC FINGER PROTEIN JAGGED | 12 | 288 | IPR045320 | GO:0003700 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu5g0154 | Pvu-Chr5 | 1305066 | 1305932 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu5g0154 | 104 | 184 | C2H2 Transcription Factor Family | AT5G10970 | 56.098 | 1.03e-21 | 90.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pvu5g0154 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu5g0154 | - | - | gmx:102661483 | 358.221 |