Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0154 ATGGCATCCTCGCATAATTTGGAAGATTATTCCTCTGAAGCCTCTAGCACCTCACAAAATATTTGCCATAAAGAAGAAGGGAAGAAGGACGAGGTGACAACAACGATGGAGAAGGGTATCAAATTTGAAGAAGGTCAGGTTTCTAATTCCAAACCTCAAATGGTGTTAGATTTTGCTAAGTTTTCCAATGATCAATCAATTTGTGGGTCAAAAGTGGAATTAGATTTTTTCAATCCAATAAATATCACGGGTTCATCTTCTAGGACAAATCACACTCAAGGGAGAGATGAGAACAACAAAGAAGAGAAATCATCAGAGGCTAAGACTTTTTCTTGCAATTTTTGTCAGAAAGAGTTTTCTTCTTCACAGGCACTGGGAGGACACCAAAATGCCCATAAACAAGAAAGAGCTCTTGCAAAGCGTCGTCAAGGAATTGATGGTGGTACTTTTGGGAACCCTCATATTCTCTATTATCCTTATCCCACACACTCCTTGTATGGATCTTATAATAGGGCACTTGGGGTTCGGATGGATTCCATGATTCACAAGCCTATGTATCCTTCATCCTCACTAGGTTTGAGGTTTGGTCAAGCATTGTCAAGACAAGAGATGATAAACTCTTCTTCTCTTGGTTTACGGGAAAATACCGGAATTAGGATTATGGGAAATGACACAATTTTGAGGAAACAAAATGATCATGGTACTACTAGAAACAATATTCCATTTCTTGGAGAATCTTCTACAAATATTACTACCAGATCAAATTTGACTCCATTGAATATAGAGGATAATGGTGATCACTCCAAAAAGGAAGAAATCTCGGATTCCACTTCTTCTGATGAAATTGATTTATCACTTAAACTTTAG 867 0.3772 MASSHNLEDYSSEASSTSQNICHKEEGKKDEVTTTMEKGIKFEEGQVSNSKPQMVLDFAKFSNDQSICGSKVELDFFNPINITGSSSRTNHTQGRDENNKEEKSSEAKTFSCNFCQKEFSSSQALGGHQNAHKQERALAKRRQGIDGGTFGNPHILYYPYPTHSLYGSYNRALGVRMDSMIHKPMYPSSSLGLRFGQALSRQEMINSSSLGLRENTGIRIMGNDTILRKQNDHGTTRNNIPFLGESSTNITTRSNLTPLNIEDNGDHSKKEEISDSTSSDEIDLSLKL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0154 288 SUPERFAMILY beta-beta-alpha zinc fingers 107 137 IPR036236 -
Pvu5g0154 288 MobiDBLite consensus disorder prediction 229 262 - -
Pvu5g0154 288 Gene3D Classic Zinc Finger 86 146 - -
Pvu5g0154 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Pvu5g0154 288 MobiDBLite consensus disorder prediction 229 288 - -
Pvu5g0154 288 MobiDBLite consensus disorder prediction 1 21 - -
Pvu5g0154 288 MobiDBLite consensus disorder prediction 1 32 - -
Pvu5g0154 288 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 12 288 - -
Pvu5g0154 288 MobiDBLite consensus disorder prediction 82 105 - -
Pvu5g0154 288 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Pvu5g0154 288 MobiDBLite consensus disorder prediction 263 277 - -
Pvu5g0154 288 PANTHER ZINC FINGER PROTEIN JAGGED 12 288 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0154 Pvu-Chr5 1305066 1305932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0154 104 184 C2H2 Transcription Factor Family AT5G10970 56.098 1.03e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g0154 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0154 - - gmx:102661483 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0154 5 1305066 1305932 Pvu5g0154 5 1305066 1305932 ECH