Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0153 ATGGCATCCTCACATAATTTGGAAGATTATTCCTCTGAAGTCTCTAGCACCTCACAAGACATTTGCCGTAAAGAAGAAGGAAAGAAGGTTGAGGTGACACCAATGAAGGATAAAAGTATAAAATTTGAAGAAGGTCATGTTTCCAATCCCAAAACTCATATGGTGTTAGATTTTGTTAAGTTTTCCAATGATCAATCAATTTGTGGGTCAAAAGTGGAATTGGATTTTTTCAATCCAATGAATGTCGGGGGTTCATCTTCTAGGACAAATCACAATCAAGGAAGAGATGAGAACAACAAAGAAGAGAAATCATCAGAGGCTAAGACTTTTTCTTGCAATTTTTGTCAGAAAGAGTTTTCTTCTTCACAGGCACTGGGAGGACACCAAAATGCTCATAAACAAGAAAGAGCTCTTACAAAACGTCGTCAAGGAATTGATGGTGGTGGTTTTAGGAACCCTCATATTCTCTATTATCCTTATCCCACACACTCTTTGTATGGATCTTATAATAGGACACTTGGGGTTCGAATGGACTCCATGATTCACAAGCCTCTATATCCTTCATCCTCATTAGGTTTAAGGTTTGGTCAAGCATTTTCAAGGCAAGGGATGATAAACTCTTCTTCTCTTGGTTTACAGAAAAATACTGGAATTAGGATTATGGAAAGTGATACAACTTTGAGGACACAAAGTGATCATGGTACTAGTAGACACAATATTCCATTTCTTGCAGAATCTTCTACAAATGTTACTAACAAATCAAATTTGACTTCATTGAAGATAGAGAATAACGATGATCACTCCAAGAAAGAAGAAATCTCATATCTTACTTCTTCTTTCGATGAGATTGATTTATCACTTAAGCTTTAG 870 0.3621 MASSHNLEDYSSEVSSTSQDICRKEEGKKVEVTPMKDKSIKFEEGHVSNPKTHMVLDFVKFSNDQSICGSKVELDFFNPMNVGGSSSRTNHNQGRDENNKEEKSSEAKTFSCNFCQKEFSSSQALGGHQNAHKQERALTKRRQGIDGGGFRNPHILYYPYPTHSLYGSYNRTLGVRMDSMIHKPLYPSSSLGLRFGQAFSRQGMINSSSLGLQKNTGIRIMESDTTLRTQSDHGTSRHNIPFLAESSTNVTNKSNLTSLKIENNDDHSKKEEISYLTSSFDEIDLSLKL* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0153 289 MobiDBLite consensus disorder prediction 1 30 - -
Pvu5g0153 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Pvu5g0153 289 SUPERFAMILY beta-beta-alpha zinc fingers 107 138 IPR036236 -
Pvu5g0153 289 MobiDBLite consensus disorder prediction 82 105 - -
Pvu5g0153 289 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Pvu5g0153 289 PANTHER ZINC FINGER PROTEIN 3-LIKE 12 289 - -
Pvu5g0153 289 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 289 IPR044246 GO:0009788
Pvu5g0153 289 MobiDBLite consensus disorder prediction 1 18 - -
Pvu5g0153 289 Gene3D Classic Zinc Finger 86 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0153 Pvu-Chr5 1301674 1302543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0153 104 223 C2H2 Transcription Factor Family AT5G10970 45.455 5.47e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g0153 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0153 - - gmx:102663393 343.584