Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0136 ATGTCCAAAAACAAAGAGAAAAAGAAGAAAAAGAGCGAAAGCGATGAAGACGACGACGTTTTCTACTACCGCTATAGCAGTGTAAACCCTAACCCTACGCAACACAATCCCAATTCAAATCCCAATCCCAATCCCAAAACCAATAACAAGGGATCTTCGTCATTGGCACCGTCCAAATCAACGTTGTACGTTTCAAACATCGATTACACGCTCACCAATTCTGATCTCCACACGCTCTTCACTACCTTCGGCCGAATCGCGCGCGTGACGGTCCTCAAGGACCGCCACACGCGCCTCAGCCGCGGCGTCGCGTTCATCCAGTTCGTCTCCATCCACGACGCGCGCAACGCCGCCGCGCAGATGCATGGGAAGGTCCTCAACGGCCGCACCCTCACCGCCTCCATCGCCGCCGACAACGGCCGCGCGCCCGAGTTCATCCGTAAGCGCGTCTACCGTGACACTGCCCGCTGCTTCGAGTGCGGCGCCGACGGGCACCTCTCCTACGACTGCCCGCGGAACCAGCTAGGCCCCCGCCAGCGCCCCGAGCCCAAACGCCCCCGCCGTGGGCCCCACCACCGCGACGACGACAACGACGATGGCGGGGAGGATTCTGACGGTGTCGGAACCGCTGCCCGGTTCGAGGATGACAACTGGGCGTCCGTCGTGGATGACGGCGCCGACGAGAGGCTTCGGACGGGAAACCGCGACGACGATGAATCCGTGGCTGTGAAGAGTAAGAAGAAGAAGAAGAAAGCCGGGTACTTCAGTGATGAGAGTGATGATGATGACTTTGATGGTTGA 801 0.5893 MSKNKEKKKKKSESDEDDDVFYYRYSSVNPNPTQHNPNSNPNPNPKTNNKGSSSLAPSKSTLYVSNIDYTLTNSDLHTLFTTFGRIARVTVLKDRHTRLSRGVAFIQFVSIHDARNAAAQMHGKVLNGRTLTASIAADNGRAPEFIRKRVYRDTARCFECGADGHLSYDCPRNQLGPRQRPEPKRPRRGPHHRDDDNDDGGEDSDGVGTAARFEDDNWASVVDDGADERLRTGNRDDDESVAVKSKKKKKKAGYFSDESDDDDFDG* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0136 266 SMART rrm1_1 61 134 IPR000504 GO:0003723
Pvu5g0136 266 MobiDBLite consensus disorder prediction 1 57 - -
Pvu5g0136 266 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 263 IPR044598 GO:0000398|GO:0005689
Pvu5g0136 266 MobiDBLite consensus disorder prediction 178 198 - -
Pvu5g0136 266 Gene3D - 1 144 IPR012677 -
Pvu5g0136 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Pvu5g0136 266 SMART c2hcfinal6 156 172 IPR001878 GO:0003676|GO:0008270
Pvu5g0136 266 MobiDBLite consensus disorder prediction 217 257 - -
Pvu5g0136 266 SUPERFAMILY RNA-binding domain, RBD 28 143 IPR035979 GO:0003676
Pvu5g0136 266 SMART rrm2_1 61 134 IPR003954 GO:0003676
Pvu5g0136 266 MobiDBLite consensus disorder prediction 26 57 - -
Pvu5g0136 266 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 263 - -
Pvu5g0136 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 131 IPR000504 GO:0003723
Pvu5g0136 266 MobiDBLite consensus disorder prediction 7 22 - -
Pvu5g0136 266 Gene3D - 147 192 - -
Pvu5g0136 266 MobiDBLite consensus disorder prediction 169 266 - -
Pvu5g0136 266 SUPERFAMILY Retrovirus zinc finger-like domains 140 173 IPR036875 GO:0003676|GO:0008270
Pvu5g0136 266 CDD RRM_ZCRB1 59 136 IPR034219 -
Pvu5g0136 266 ProSiteProfiles Zinc finger CCHC-type profile. 156 172 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0136 60 136 Eukaryotic Initiation Factors Gene Family AT1G49760 33.766 3.31e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0136 K13154 - gmx:100814914 311.997