Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0111 ATGGAAACCAATTTGGGGTTGGTTGCAGGCTCTCACAACAGCAATGAATTCATTATCATACCTCAGGATGGAGTGCAAAGAAGGTTGAAAGAAATAGATGGAAGAAGGTGTGAACTGTGTGGAGATGATATAGGGGTTAATGCAGAGGGTGAGGTGTTTGTGGCCTGCAACGAGTGTGGCTTTCCTGTTTGTAAAAGCTGTTATGAGTATGAACGGAGGGAGGGAAACCATGTCTGCCCTCAATGCAAAACAAGATTCAAGCGTCTCAAAGGCTGTGCTAGAGTTGAGGGGGATGAAGAAGACGATGATATTGATGAGTTGGAGAATGCAGAAGATATTGATGGAGGAAATAAACAAGATTTTAACACAACCATGTCTCATGAGGATGAAGAAACTTGTGAAGAACATGATGCTTTGGTTCCTTCAAGTTCAACCACATTGAGCAAAGAGATGGTTCCATTGCAAGCAAGATCCATGGATCCTTCCAAGGACCTGGCTGCTTATGGCTATGGAAGTGTTGCATGGAAGGAAAGAATGAAGATATGGAAGCAAAGACAAATGGAACTTGGTAATGTCAGAAAACAAAATGACGAGGAAGATCCAAACAACCTTGTAGATGATGACACTGAATTCCTTATAATGGATGAAGGAAGACAGCCATTATCAAGAAAGTTATCTGTTCCATCAAGTAAAATTAACCCTTACCGAATGGTCATACTAATGAGGCTAGTTGTTCTTGGATTCTTCTTCCATTACCGAATTGTGCACCCTGTAGAACATGCCTATGCTTTGTGGCTAGTCTCAATAATTTGTGAAATTTGGTTCACTCTTTCATGGATTCTAGACCAGTTCCCAAAGTGGCTTCCAGTCATCAGACAAACTTATCTGGACAGGCTTTCCTTGAGGCAAGAAGGGAAACCTTCTCAACTTTCTCCAATTGATATATTTGTGATCACAGTGGATCCACTAAAAGAGCCTCCTCTTGTGACTGCAAACACAGTTCTTTCCATTCTAGCCATGGATTACCCTGCTGAAAAGGTGTCATGTTATGTATCTGATGATGGGGCAGCAATGTTAACATTTGAGGCTTTATCTGAAACTTGTGAATTTGCAAAGAAATGGGTTCCTTTTTGTAAGAAGTTTAGCATTGAGCCAAGAGCTCCTGAATGGTACTTTGCTGAGAAGATAAACTACCTAAATGACAAGGTGCACCCATCATTTGTCAAAGAGAGAAGAGCAATGAAGAGAGAATATGAAGAGTTCAGAGTTGGAATTAACTCTCTAGTTGCAAAGTCTAGGAAGGTCCCAGAAGAAGGGTGGACAATGCAAGATGGAACTCCATGGCCAGGAAATAATGTTGGTGATCATCCAGGAATGATACAGGTTTTTCTTGGAGAAAATGGAGGATATGACATGGATGGCAAGGAATTACCTCGCTTGATATATGTTTCTAGAGAAAAGAGGCCAAAATTCAATCACCAGAAAAAAGCAGGAGCATTGAATGCATTGGTTAGAGTGTCTGCAGTGCTTTCCAATGCACCTTTTGTGTTGAACTTGGACTATGATCATTACATCAACAATAGCAAGGTTGTAAGAGAGGCAATGTGCTTCATGATGGACCCAGTAGTAGGAAAAAGGGTCTCCTATGTGCAGTTCTCACAGAGATTTGATGGTATTGAGCAACATGCCAATCAAACAAATGGATTCTTTGATATTAACATGAAAGGCTTGGATGGTATACAAGGACCTACATATGTTGGAACAGGATGTGTCTTTAGAAGGAAAGCACTTTATGGTTTTGATTCTCCAAGAAAAAAGAAGCCTCCAACCAAGACATGCAATTGTTGGCCAAAGTGGTGTTGTTGTATGGGGAAGAAGAAGAAGAAGAAGTTAAAGAAACCAAAGTTTGAGATAATGGAAAACAGTCACAGTAAAGTACATTCTGAAGCATCAATAGTTGAAGGCACAGAAGATGAAACATTGGCTCACATTTCAAATCCAAAGTTTGCCAAGAAATTTGGACAATCTCCTATCTTTATTGCATCTACTCAACTGGTGGAAGGTGAGACACTCAAACATGGAAACCTTGCTTCTCAACTTACAGAAGCAATACATGTCATTAGTTGTGGCTATGAAGAGAAAACAGAATGGGGAAAAGAGGTTGGGTGGATCTATGGTTCAGTTACAGAAGATATATTGACAGGTTTTAAAATGCACTGTCATGGATGGAGATCTATATATAGTATTCCTGAAAGACCAGGATTTAAAGTATCTTCCCCAAGAAACCTTTCTAATGGATTGCAACAAGTGTTTCAATGGGCCCTTGGATCAATGGAAATATTCATGAGTAAACATTGCCCTCTTTGGTATGGATATGGAGGAGGACTAAAGTGGTTACAACGCATTTCTTATATAAATGTCATTGTATATCCATGGACATCAATACCTTTGGTGGTATATTGTACCCTACCTGCTGTTTGCTTGCTCACTGGCAAATTTATCATTCCTGAGCTCAGCAATACAGCTGGAATGTGGTTTGTGTCTCTTTTCTTCTGCATTTTCACCACAAGTGTGTTGGAGATGAGATGGAGTGGTGTCACAGTTGATGAATGGTGGAGAAATGAGCAGTTTTGGGTGATTGGAGGTGTGTCAGCACATTTTCTTGCAGTGTTCTTGGGGATGTTCAAGGTCTTAGCAGGTGTAAATACAAACTTCATAGTGACATCAAGGGAAGATGATGAGAAGCAGCATTCTGACATGTTTGCATTGAATTGGACCACTTTGCTGATCATACCAACAACATTGCTGATACTGAACATAATTGCTGTGGTTGCTGGAATCTCAAATGCAATAAACATTGGCTTTGAGGCTTGGGGACCTCTGCTTGGTAAACTCTTGTTTTCTTTGTGGGTGATTCTTCATTTGTATCCATTCCTCAAAGGCATGGTAGGTAGGCATAACAGGACTCCTACCATTGTTGTTGTTTGGGCAATCCTTCTTGCCACTTTCTTTTCTGTCTTGTGGGTCAAAATTGATCCATTTTTACCCAAGTCAAGTGGGCCAATTCTAGAGGAATGTGGATTGGATTGCACTTAG 3096 0.4044 METNLGLVAGSHNSNEFIIIPQDGVQRRLKEIDGRRCELCGDDIGVNAEGEVFVACNECGFPVCKSCYEYERREGNHVCPQCKTRFKRLKGCARVEGDEEDDDIDELENAEDIDGGNKQDFNTTMSHEDEETCEEHDALVPSSSTTLSKEMVPLQARSMDPSKDLAAYGYGSVAWKERMKIWKQRQMELGNVRKQNDEEDPNNLVDDDTEFLIMDEGRQPLSRKLSVPSSKINPYRMVILMRLVVLGFFFHYRIVHPVEHAYALWLVSIICEIWFTLSWILDQFPKWLPVIRQTYLDRLSLRQEGKPSQLSPIDIFVITVDPLKEPPLVTANTVLSILAMDYPAEKVSCYVSDDGAAMLTFEALSETCEFAKKWVPFCKKFSIEPRAPEWYFAEKINYLNDKVHPSFVKERRAMKREYEEFRVGINSLVAKSRKVPEEGWTMQDGTPWPGNNVGDHPGMIQVFLGENGGYDMDGKELPRLIYVSREKRPKFNHQKKAGALNALVRVSAVLSNAPFVLNLDYDHYINNSKVVREAMCFMMDPVVGKRVSYVQFSQRFDGIEQHANQTNGFFDINMKGLDGIQGPTYVGTGCVFRRKALYGFDSPRKKKPPTKTCNCWPKWCCCMGKKKKKKLKKPKFEIMENSHSKVHSEASIVEGTEDETLAHISNPKFAKKFGQSPIFIASTQLVEGETLKHGNLASQLTEAIHVISCGYEEKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYSIPERPGFKVSSPRNLSNGLQQVFQWALGSMEIFMSKHCPLWYGYGGGLKWLQRISYINVIVYPWTSIPLVVYCTLPAVCLLTGKFIIPELSNTAGMWFVSLFFCIFTTSVLEMRWSGVTVDEWWRNEQFWVIGGVSAHFLAVFLGMFKVLAGVNTNFIVTSREDDEKQHSDMFALNWTTLLIIPTTLLILNIIAVVAGISNAINIGFEAWGPLLGKLLFSLWVILHLYPFLKGMVGRHNRTPTIVVVWAILLATFFSVLWVKIDPFLPKSSGPILEECGLDCT* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0111 1031 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 22 1031 - -
Pvu5g0111 1031 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 2 [UDP-FORMING]-LIKE 22 1031 - -
Pvu5g0111 1031 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 110 IPR013083 -
Pvu5g0111 1031 Pfam Cellulose synthase 313 1022 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pvu5g0111 1031 SUPERFAMILY RING/U-box 23 105 - -
Pvu5g0111 1031 Pfam Zinc-binding RING-finger 28 103 IPR027934 -
Pvu5g0111 1031 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 470 605 IPR029044 -
Pvu5g0111 1031 CDD mRING-HC-C4C4_CesA_plant 37 85 - -
Pvu5g0111 1031 SUPERFAMILY Nucleotide-diphospho-sugar transferases 327 829 IPR029044 -
Pvu5g0111 1031 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0111 Pvu-Chr5 904542 912610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0111 1 1030 Glycosyltransferase AT2G21770 60.350 0.0 1374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0111 K10999 - gmx:100815971 1788.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0111 5 904542 912610 Pvu5g0111 5 904542 912610 ECH