Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0107 ATGGCTTTGAGGGTTATAGCAGTTTCGGCGGTTTCTACATTTTTGAGCTTTGTGGGTCTTCAGTTTTGCACAGACCTGTCTTTGGAGAAACTTAGATCAGATGGACTAATAGGCTGGAATTTAATTCACTTGGACGATGCCAGCCAAGAGATTGAGTTGCCTTCGGGTTTGTACACCACCATAGGGCTACTGCTGAATTGCATGATCAATTTATTTGTCCTTCTCAATCTTTGTATCAAGGCTGTGTTTTTCTCAGAGTTATATGCTTCTGAGACTCGTAAACTGATTGAGCGTCTTGTTAATTATGTCATTTACAAGGGGACATTTCTTCCACTGATTGTGCCACCAACAATTTATCAAGCTGGTCTTTGGTCAACTTGGTTGACTGTGCTTTGCTCTCTGAAGATGTTTCAAGCTTTAGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCATCTGCTACACCCTGGACGTATCTTCGTGTATATTCAGCATTATTATTTGTTTTCATGGCTGATGTTTTCTGGATAAGGCTTTGTCTGACAATATATAGAACACACGGGTCCTCCATGTATCTGCTATTGTTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTACATGGATTTCAGCTACTTGACATATGGCTGCATCATTCAGCTTGCAATAGCAGTGATTTCCGAACACCTAAACTGCTTAACACATTAACTGCAGGTTCATTGTTGGAATGGAAGGGAATTCTTATTCGGAACTTGGGGTTTTTCCTAGACATGGCTACATTTTTTATGGCACTTGGCCATTACTTGTATATATGGAGGCTTCATGGAATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTGCTTAGTGCAATAGTAAATCGCATAAAAGGCTTTATCAAGCTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCGTATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTATATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGATATATATACTTGTCCAACTTGTCGAAAGCCACTTTTTGAGGGTGTGCCTCAAAATGAAGCAAGCTCTGACGCGGGAACTATATCTAGTGATGAACAGCTTGCACGCCAAATTAGTGCTGGATTGGATCGGCCAAACCCTTCTAGACATACCATGCCTACCGGATTATATCCAAATCAGACACTAAACACTCCTGAAGGTGTTACTTGGAG 1325 0.4128 MALRVIAVSAVSTFLSFVGLQFCTDLSLEKLRSDGLIGWNLIHLDDASQEIELPSGLYTTIGLLLNCMINLFVLLNLCIKAVFFSELYASETRKLIERLVNYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMADVFWIRLCLTIYRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACNSSDFRTPKLLNTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIVNRIKGFIKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLLYLACLRSWLDQGLTDIYTCPTCRKPLFEGVPQNEASSDAGTISSDEQLARQISAGLDRPNPSRHTMPTGLYPNQTLNTPEGVTW 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0107 441 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 421 - -
Pvu5g0107 441 MobiDBLite consensus disorder prediction 423 441 - -
Pvu5g0107 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 386 IPR013083 -
Pvu5g0107 441 MobiDBLite consensus disorder prediction 412 441 - -
Pvu5g0107 441 Pfam Ring finger domain 336 380 IPR001841 -
Pvu5g0107 441 SUPERFAMILY RING/U-box 325 386 - -
Pvu5g0107 441 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 421 - -
Pvu5g0107 441 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0107 Pvu-Chr5 873881 878293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0107 57 421 C3H Transcription Factor Family AT3G16090 25.888 1.65e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0107 K10636 - gmx:100820578 821.617