Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0087 ATGGAGCTGAAGCCAAATCTTACTCCTGTCCTTACTGATGCCTTAACAAGGTCAAGGCTGGGTGTGCCTTCTGGTTTGTCACCTTACTCTTCTCCAAAAGGGGCAACCTTTCCCCATCATGGTCCCTTGCTGGCAATTCCAAGGAAGAAGACAGGAATTCTTGATGATTTTCGTTCTAGCGGTTGTCTTGATGCCATGAACTCTTCTTCTCCTACTCACAATAAAGTATCCAAGGATCTTAGTCATGGGGTTGGATCACCTGATGCTGCTTATAGTACCTGGCTGCTAAAGTTTCCATCAGCACTTACATCTTTTGATCAAATTTCTAACTGTGCAAAAGGGAAGAGAATAGCATTATTTCTTGATTATGATGGGACTCTTTCACCCATTGTGGACAATCCTGACTGTGCGTTCATGTCAGATAATATGCGTGCTGCTGTTAAAAAAGTGGCGGAATATTTTCCAACTGCAATAATTAGTGGAAGAAGGCGTGACAAGGTATATGAATTTGTTGGACTAAGTGACCTCTATTACGCTGGTAGTCATGGGATGGACATTATTGGTCCTCCTAGACAATCTATTTCTGGTGATCACCCTGATTCTGAGAAGCAGGGTGTTGGTGAACTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCATGATTGATGAGGTACTTGGGTTGCTCAAGGAGTGTACAAAAGACATTGAAGGAGCAACAGTTGAGAACAATAAGTTTTGTGCCTCTGTACATTACCGGAATGTAGATAAGGAGAGTTGGCCGATTGTTGGACAACGTGTATATGATGTTATGAAGCAGTATCCACGTTTGCGTTTAACTCATGGGCGGAAGGTTTTAGAGGTTCGCCCAGTGATTGACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCACTTGGACTTGACAATTGCGATGACTTGCTAGCTATATATGTTGGAGATGATAGAACAGATGAAGATGCCTTTAAGGTTTTGAGAGAATCTAATAAAGGTTGTGGCATCTTAGTGTCCCCTTCCCCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCCTCAGAGGTGATGCAATTTCTGACATCACTGGCTGCATGGAAATCAAGCATTCAAGGTCGCTGA 1143 0.4269 MELKPNLTPVLTDALTRSRLGVPSGLSPYSSPKGATFPHHGPLLAIPRKKTGILDDFRSSGCLDAMNSSSPTHNKVSKDLSHGVGSPDAAYSTWLLKFPSALTSFDQISNCAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRRRDKVYEFVGLSDLYYAGSHGMDIIGPPRQSISGDHPDSEKQGVGELNLFQPAAEFLPMIDEVLGLLKECTKDIEGATVENNKFCASVHYRNVDKESWPIVGQRVYDVMKQYPRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLDNCDDLLAIYVGDDRTDEDAFKVLRESNKGCGILVSPSPKESNAIYSLRDPSEVMQFLTSLAAWKSSIQGR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0087 380 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 380 IPR044651 GO:0004805|GO:0005992
Pvu5g0087 380 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 119 334 IPR006379 -
Pvu5g0087 380 TIGRFAM T6PP: trehalose-phosphatase 114 371 IPR003337 GO:0003824|GO:0005992
Pvu5g0087 380 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 380 - -
Pvu5g0087 380 SUPERFAMILY HAD-like 118 373 IPR036412 -
Pvu5g0087 380 Pfam Trehalose-phosphatase 120 361 IPR003337 GO:0003824|GO:0005992
Pvu5g0087 380 CDD HAD_TPP 118 364 - -
Pvu5g0087 380 Gene3D - 117 208 IPR023214 -
Pvu5g0087 380 Gene3D - 209 379 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0087 Pvu-Chr5 716348 722449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0087 108 376 Trehalose Biosynthesis Gene Families AT1G23870 24.648 6.42e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0087 K01087 - gmx:100783008 671.389