Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0082 ATGAATAATTTTTCTCATGTTCCCCCCGGTTTTAGGTTCCACCCCACTGATGAGGAACTTGTTGACTACTATCTCAGGAAGAAAATCACCTCAAGAAGGATTGACCTAGATGTCATAAAAGATGTTGACCTCTATAAAATCGAGCCATGGGATCTTCAAGAGCTCTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACAGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCAATCTATTCAAAGCATGAGTTGATAGGGATGAGGAAAACCCTAGTCTTTTACAAAGGTCGAGCCCCCAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCACACCACAG 432 0.4144 MNNFSHVPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0082 144 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Pvu5g0082 144 SUPERFAMILY NAC domain 4 140 IPR036093 GO:0003677|GO:0006355
Pvu5g0082 144 Gene3D NAC domain 16 144 IPR036093 GO:0003677|GO:0006355
Pvu5g0082 144 ProSiteProfiles NAC domain profile. 7 144 IPR003441 GO:0003677|GO:0006355
Pvu5g0082 144 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 142 - -
Pvu5g0082 144 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0082 Pvu-Chr5 666993 670088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0082 1 144 NAC Transcription Factor Family AT1G12260 88.889 1.22e-98 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu5g0082 NAM 2.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0082 - - cic:CICLE_v100069881m 297.745