Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0081 ATGGAAACCCTTATTGCAAAAACATGCTTCACACTGCTATTCATGTCTTCATTCTTCTCACTAGCCTCATCAAGAAGAGGACCAGCTTCATCCAGCAACATAGATTGGTGGTGCAACCTAACCCCACACCCTGAACCCTGCAAATACTACATCACCACTAACCAAACCAAGAGCCACCATTTCACATTGATCAAGCACAGAACCATCTTCCGAGGAATGCTTGCTGAGCATGCCCTAAACCAGGCTCTCATCATGCAAAAAGAAGCACTTGAATCTGAACAATCCAACATGCCAACAAAGAACCACAGAACAGTGCATGGCGACTGCTTGAAGCTCTATGGCAAAACCATCTTCCACCTCAACCGCACCCTTGAGTGCTTCCATGGGAACCAAAACTGTTCATCGGTTGATGCACAGACATGGCTCAGCACTGCCCTCACAAACATCCAAACGTGTCAAGATGGAACAGTTGAACTTGGTGTTGAAGATTTCAAGGCTCCCAACAACAAGAACAATGTGACTGAGATGCTGAGGAACAGCTTGGCCATCAACATGGACTTCATGAAACATGATCATCAGGCACAGAAAGCTGATGAAGAAGCGTTTCCAAGTTGGTTTTCGAAGCCAGAGAGGAAACTGTTGCAGTCTGCAACGATAAAGGCTCATGCAGTGGTGGCAAAAGATGGTTCTGGGAATTTCAGAAGTGTGCAAGATGCTCTAAATGCTGCGGCAAAGAGGAAGGTGAAAACGAGGTTTGTGATACATGTGAAGAAAGGGGTTTATAAGGAGAATATTGAGGTTGCTGTGCACAATGATAACATTATGCTGGTTGGTGATGGAATTTCAAACACTATAATCACCAGTAGCAGAAGTGTTCAACAAGGTTACACCACTTATAGCTCTGCAACTGCTGGCATAGATGGTCTCCACTTCATTGCAAGGGACATGACCTTCCAAAACACTGCCGGAGCTCAAAAGGGACAAGCGGTGGCGCTCCGGTCGGCCTCCGATCTCTCCGTCTTCTACCGGTGCGCCGTCATGGGCTTCCAAGACACCCTCATGGCCCATGCACAACGCCAATTTTACAGGCAATGCTACATCTATGGCACCATTGACTTCATATTTGGCAATGCTGCAGTAGTCTTCCAAAATTGCTACATCTACGCTAGAAAACCCTTAGAGGGCCAGGCCAACATGATCACGGCCCAAGGTCGAGGCGACCCATTTCAGAACACTGGAATTTCCATCCACAATTCTCAAATTCGGGCCGCCCCAGACCTCAAGCCCGTGGTTGACAAATACAAGACCTTCTTGGGTAGGCCTTGGCAACAATACTCAAGAGTTGTGGTCATGAAAACTTTCATGGACACCTTGGTGAGCCCGTTGGGCTGGTCCCCATGGGATGATTCTAATTTTGCCCAAGACACACTTTATTATGGTGAGTATCAAAACTATGGGCCTGGTGCTTCTACAAGCAGTAGAGTGAAATGGCCCGGGTTTCATGTGATCACAAGCCCAACTGAAGCGTCTCAATTTACAGTCACACGCCTCCTTGCAGGCCCAACGTGGTTGGGCTCTACAACTGTGCCATTTACCTCTGGTCTCTGA 1608 0.4751 METLIAKTCFTLLFMSSFFSLASSRRGPASSSNIDWWCNLTPHPEPCKYYITTNQTKSHHFTLIKHRTIFRGMLAEHALNQALIMQKEALESEQSNMPTKNHRTVHGDCLKLYGKTIFHLNRTLECFHGNQNCSSVDAQTWLSTALTNIQTCQDGTVELGVEDFKAPNNKNNVTEMLRNSLAINMDFMKHDHQAQKADEEAFPSWFSKPERKLLQSATIKAHAVVAKDGSGNFRSVQDALNAAAKRKVKTRFVIHVKKGVYKENIEVAVHNDNIMLVGDGISNTIITSSRSVQQGYTTYSSATAGIDGLHFIARDMTFQNTAGAQKGQAVALRSASDLSVFYRCAVMGFQDTLMAHAQRQFYRQCYIYGTIDFIFGNAAVVFQNCYIYARKPLEGQANMITAQGRGDPFQNTGISIHNSQIRAAPDLKPVVDKYKTFLGRPWQQYSRVVVMKTFMDTLVSPLGWSPWDDSNFAQDTLYYGEYQNYGPGASTSSRVKWPGFHVITSPTEASQFTVTRLLAGPTWLGSTTVPFTSGL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0081 535 Pfam Pectinesterase 223 520 IPR000070 GO:0030599|GO:0042545
Pvu5g0081 535 PANTHER PECTINESTERASE 5 534 - -
Pvu5g0081 535 Pfam Plant invertase/pectin methylesterase inhibitor 33 183 IPR006501 GO:0004857
Pvu5g0081 535 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Pvu5g0081 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 187 IPR035513 -
Pvu5g0081 535 CDD PMEI-like_3 36 189 - -
Pvu5g0081 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 184 IPR035513 -
Pvu5g0081 535 SMART PMEI_2 29 183 IPR006501 GO:0004857
Pvu5g0081 535 Gene3D - 216 535 IPR012334 -
Pvu5g0081 535 PANTHER PECTINESTERASE 5 534 - -
Pvu5g0081 535 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 184 IPR006501 GO:0004857
Pvu5g0081 535 SUPERFAMILY Pectin lyase-like 217 534 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0081 Pvu-Chr5 660340 663598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0081 31 535 Carbohydrate Esterase AT3G47400 56.977 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0081 K01051 - gmx:100806133 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0081 5 660340 663598 Pvu5g0081 5 660340 663598 ECH