Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0062 ATGAAGCCAAACTCAAAACCCCAAAAAAGCCAAATGAAAAGAGCCAAACCATACCTCACGAGGAACATGTCCTGGTCACCACCACCACAACAACCACCAACACTCTTCAGCTCCCTTCTTCTTCTCATTGCGTTGTTCGTCACAGTAACAACACCAACACCAGCAGAAGCAGAAGCAGAGCCACCACCAACCTCCGACGCGCTTCTCTTGATGCGCTTCAAGCAGTTACACGTTTCCTCCGACCCACGCGCCTTCCTCTCCGACTGGCTCCCCCACGCGCCGTCTCCCTGCGCGTGGCGCGGGGTCACCTGCTCCGGCGAGTCCCGCCGCGTCACCGCCGTCGACCTCGCCGACGCCGCCCTCTCCGGCACCCTCCACCTCCCCACCCTCACGTCGCTCCCTTCGCTGCACACGCTCGTCCTACGTGGCAACTCGTTCAACGCTTTCAACCTCAGCGTTTCGACGTTTTGCGCGCTTCAGAAACTTGACCTCTCTTCCAACAACTTCTCCGGGAAGTTTCCTTTTGCAAACCTAACTCCGTGTAACCGTCTCACTTACTTGAACCTCTCAAATAATCTCATCACCGATGGGCTCGTCTCCGGGCCCGGGATTGGGCTTGGGCTTTCGCTGGCCCAACTCGACTTGTCCAGGAACCTCGTCTCCGACGTGAGTCTTCTCGTCTCCGCTCTCAACGGCTCTGCTCTCGTTTTTCTGAACTTCTCCGACAACCGGCTCGCGGGTCAACTCAGCGAGTCGCTCGTTTCGCGGAGCGCGAACCTCTCCACGTTGGACCTCTCTTACAACCTTCTCTCCGGGGCGGTGCCGCCCCGGCTCGTGAACGACGCCGTTCAGGTGCTTGATTTCTCGTTCAACAACTTCTCGCGGCTGGACTTCGTCTCGTGCGGGAGCCTCACGCGGCTGAGCTTCTCGCGCAATGCGCTCTCCCGAGACGAGTTTCCGCGCGGGCTGAGCGGCTGCGAGAGGCTCGAGGTTCTGGATCTTTCTCGGAATGAGTTCGAAGCGGAGATTCCGGGGGAGATTCTTCGGAGTTTGTGGAGGTTGAAGTCTTTGTTTCTCGAGCGCAACAGATTCTACGGCGAGATTCCGAGCGAGCTCGGAAGCCTCTGTGGAAGTCTCGTGGAAGTTGATCTCTCCGAGAACATGCTTTCTGGTGCGTTGCCGTTGAGTTTTGTGAACTGTTCTTCTCTGCGGAGTTTGAACCTCGCGAGGAACTATCTCTCTGGGAACTTCTTGGTTTCCGTGGTTAGCAAGCTTCAGAGTCTTGAGTATCTAAACGCGGCGTTTAATAACATAACGGGACCGGTTCCGTTGTCGCTGGTTAACCTGAAACGGCTTCGGGTGCTTGACTTGAGCTCGAACCGGTTAAACGGCAATGTTCCGTCGTCGTTTTGCCCTTCCGGGTTGGAGAAGTTGATCCTGGCCGGGAATTACCTTTCCGGGACGGTGCCGTCACAGGTCGGTGATTGTAAGAGTTTGAGAACGGTAGATTTCAGCTTTAACAGCTTGAACGGTTCGATACCGTGGGAGGTTTGGGCTTTGCCTAATCTCGCTGATTTGATTATGTGGGCGAATAATCTAACTGGGGAAATCCCAGAAGGGATTTGTGTTAAAGGAGGGAACTTAGAGACTTTGATTCTCAACAATAACTTAATTTCTGGGTCAATTCCGAAGTCAATTGCTAATTGCACCAACATGATATGGGTGTCGCTGGCGAGCAACCGGTTAACCGGGGCGATACCTTCTGGGATTGGGAATTTGAATGCATTGGCGATTCTCCAGCTGGGGAACAACTCGCTGAGTGGGAGGATTCCACCGGAGATAGGCGAGTGTAGGAGGCTGATATGGTTAGATTTGAATAGCAATAACCTAACTGGGAGTATCCCGTTTGAGCTTGCTGATCAAGCGGGGTTGGTTATCCCGGGCAGGGTTTCGGGGAAGCAGTTTGCGTTTGTGAGGAACGAGGGTGGGACTAGTTGCAGGGGTGCTGGTGGGCTGGTTGAGTTTGAGGATATCAGAACAGAGAGGCTTGAAGGTTTTCCCATGGTGCATTCGTGCCCCTTGACTCGAATTTACTCCGGTTGGACTGTGTATACTTTTGCTTCCAATGGGAGCATGATCTACCTTGACCTTTCCTACAACTTGTTGTCTGGGACTATTCCTGGGAATTTGGGTGTCATGGCCTATTTGCAGGTGTTGAATTTGGGGCACAATAGGTTGAGTGGGAACATTCCAGATAGTTTTGGTGGTTTGAAAGCAATTGGGGTGCTTGATCTGTCTCATAATAGTCTTAATGGGTCCATCCCTGGTTCATTGGAGAGCCTTTCTTTTCTCAGTGACCTTGACGTCTCTAATAATAATCTCACTGGGTCCATTCCTTCTGGAGGTCAGTTGACTACTTTTCCAGCTTCTAGATACGACAACAATTCTGGCCTTTGCGGCCTGCCGCTGCCGAAGTGTGGTGCTTCGAGGAATCGCTCAGTGGGTGTTGGGGGTTGGAAGAAGAAGCAGCCTGCAGCAGCTGGGGTTGTCATTGGTTTGCTCTGCTTCCTCTTGTTTGCGCTTGGGATTGTGTTGGCTTTGTACAGGGTGAGGAGGGGGCAGAGGAAGGAGGAGATCAGAGAAAAGTATATAGAGAGTCTTCCGACTTCGGGGAGCAGTAGTTGGAAGCTTTCCAGCTTTCCTGAGCCTCTGAGCATCAATGTTGCCACCTTTGAGAAGCCTCTGCGGAAGCTGACGTTTGCGCATCTTCTTGAGGCTACTAATGGCTTCAGTGCTGAGAGTATGATTGGTTCTGGGGGATTTGGTGAAGTGTACAAGGCGAAGCTGAAAGATGGCTGTGTTGTTGCCATCAAGAAGCTCATTCATGTGACGGGTCAGGGAGATAGGGAGTTCATGGCTGAGATGGAAACTATTGGTAAGATTAAGCATAGGAACCTGGTTCAGCTGCTGGGTTACTGTAAGGTTGGGGAGGAGAGGCTTCTTGTGTACGAGTTCATGAAATGGGGAAGTCTTGAGGCTGTTTTACATGAAAGGGCAAAAGGGGGAGGTTCGAATCTTGATTGGGGTGCAAGAAAGAAGATTGCCATAGGGTCAGCAAGAGGTCTTGCATTTCTTCATCATAGTTGCATTCCTCACATAATACACAGAGACATGAAGTCCAGCAACATCCTTCTTGATGAAAACTTCGAGGCTAGGGTTTCTGATTTTGGCATGGCAAGATTGGTTAATGCCCTCGATACTCATCTAACTGTCAGCACACTTGCCGGAACACCGGGTTATGTACCCCCCGAGTACTACCAGAGTTTTCGATGTACAGCTAAAGGGGATGTCTATAGCTATGGTGTCATACTGCTTGAGCTTCTATCAGGGAGAAGACCAATCGACTCTTCCGAGTTTGGTGATGACAGCAATCTTGTTGGTTGGTCTAAGAAGCTTTACAAAGAGAAAAGAATTAATGAAATACTTGATCCTGATTTAATTGTGCAAACATCTAGTGAAAGTGAACTATTTCAATATTTGAGAATTGCCTTTGAATGTCTAGATGAGAGACCCTACCGGCGGCCCACCATGATACAAGTGATGGCCATGTTCAAAGAGCTTCAGGTTGACACAGATAATGATATGCTTGATAACTTCTCTCTGAGAGACAATGTCATTGATGAAGCATGA 3690 0.5076 MKPNSKPQKSQMKRAKPYLTRNMSWSPPPQQPPTLFSSLLLLIALFVTVTTPTPAEAEAEPPPTSDALLLMRFKQLHVSSDPRAFLSDWLPHAPSPCAWRGVTCSGESRRVTAVDLADAALSGTLHLPTLTSLPSLHTLVLRGNSFNAFNLSVSTFCALQKLDLSSNNFSGKFPFANLTPCNRLTYLNLSNNLITDGLVSGPGIGLGLSLAQLDLSRNLVSDVSLLVSALNGSALVFLNFSDNRLAGQLSESLVSRSANLSTLDLSYNLLSGAVPPRLVNDAVQVLDFSFNNFSRLDFVSCGSLTRLSFSRNALSRDEFPRGLSGCERLEVLDLSRNEFEAEIPGEILRSLWRLKSLFLERNRFYGEIPSELGSLCGSLVEVDLSENMLSGALPLSFVNCSSLRSLNLARNYLSGNFLVSVVSKLQSLEYLNAAFNNITGPVPLSLVNLKRLRVLDLSSNRLNGNVPSSFCPSGLEKLILAGNYLSGTVPSQVGDCKSLRTVDFSFNSLNGSIPWEVWALPNLADLIMWANNLTGEIPEGICVKGGNLETLILNNNLISGSIPKSIANCTNMIWVSLASNRLTGAIPSGIGNLNALAILQLGNNSLSGRIPPEIGECRRLIWLDLNSNNLTGSIPFELADQAGLVIPGRVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPLTRIYSGWTVYTFASNGSMIYLDLSYNLLSGTIPGNLGVMAYLQVLNLGHNRLSGNIPDSFGGLKAIGVLDLSHNSLNGSIPGSLESLSFLSDLDVSNNNLTGSIPSGGQLTTFPASRYDNNSGLCGLPLPKCGASRNRSVGVGGWKKKQPAAAGVVIGLLCFLLFALGIVLALYRVRRGQRKEEIREKYIESLPTSGSSSWKLSSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESMIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVQLLGYCKVGEERLLVYEFMKWGSLEAVLHERAKGGGSNLDWGARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGRRPIDSSEFGDDSNLVGWSKKLYKEKRINEILDPDLIVQTSSESELFQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTDNDMLDNFSLRDNVIDEA* 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0062 1229 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 60 1215 - -
Pvu5g0062 1229 MobiDBLite consensus disorder prediction 1 17 - -
Pvu5g0062 1229 Pfam Brassinosteroid receptor island domain 643 706 IPR045381 -
Pvu5g0062 1229 SMART LRR_typ_2 733 756 IPR003591 -
Pvu5g0062 1229 SMART LRR_typ_2 781 804 IPR003591 -
Pvu5g0062 1229 SMART LRR_typ_2 449 472 IPR003591 -
Pvu5g0062 1229 SMART LRR_typ_2 520 544 IPR003591 -
Pvu5g0062 1229 SMART LRR_typ_2 326 350 IPR003591 -
Pvu5g0062 1229 SMART LRR_typ_2 133 158 IPR003591 -
Pvu5g0062 1229 SMART LRR_typ_2 351 375 IPR003591 -
Pvu5g0062 1229 SMART LRR_typ_2 757 780 IPR003591 -
Pvu5g0062 1229 SMART LRR_typ_2 593 617 IPR003591 -
Pvu5g0062 1229 MobiDBLite consensus disorder prediction 1 30 - -
Pvu5g0062 1229 Gene3D - 650 707 - -
Pvu5g0062 1229 PRINTS Leucine-rich repeat signature 260 273 - -
Pvu5g0062 1229 PRINTS Leucine-rich repeat signature 449 462 - -
Pvu5g0062 1229 Gene3D Transferase(Phosphotransferase) domain 1 1006 1225 - -
Pvu5g0062 1229 SUPERFAMILY RNI-like 347 637 - -
Pvu5g0062 1229 SUPERFAMILY L domain-like 703 824 - -
Pvu5g0062 1229 Pfam Leucine rich repeat N-terminal domain 64 105 IPR013210 -
Pvu5g0062 1229 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 1 60 1215 - -
Pvu5g0062 1229 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1053 1065 IPR008271 GO:0004672|GO:0006468
Pvu5g0062 1229 Pfam Leucine Rich Repeat 451 471 IPR001611 GO:0005515
Pvu5g0062 1229 Pfam Leucine rich repeat 736 794 IPR001611 GO:0005515
Pvu5g0062 1229 Gene3D Ribonuclease Inhibitor 208 827 IPR032675 -
Pvu5g0062 1229 Pfam Protein kinase domain 932 1202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0062 1229 SUPERFAMILY Protein kinase-like (PK-like) 911 1204 IPR011009 -
Pvu5g0062 1229 ProSitePatterns Protein kinases ATP-binding region signature. 936 959 IPR017441 GO:0005524
Pvu5g0062 1229 SMART serkin_6 930 1204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0062 1229 Gene3D Ribonuclease Inhibitor 66 179 IPR032675 -
Pvu5g0062 1229 ProSiteProfiles Protein kinase domain profile. 930 1207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g0062 1229 Gene3D Phosphorylase Kinase; domain 1 893 1005 - -
Pvu5g0062 1229 SUPERFAMILY L domain-like 76 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0062 Pvu-Chr5 467424 471724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0062 65 1228 Receptor kinase-like Gene Family AT1G55610 62.913 0.0 1421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Pvu5g0062 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0062 - - gmx:102670093 1982.61