Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0054 ATGGCGGAGGGCGATCAGCGCCGTCTTCTGGGGCTGTCGGAGGACGACGTGGAAGCTCGAGGGTCGGAATTGGCCGTCGTCAATGGCGGCGGCGGCGGCGGCAACAACAGCAACAGCAAAGGTTTGAGGGATTTGTTAAGGTTGTCGGGTCACCGACAGAGTTTCAAGCGCATTGAGAAAGAAGACGATAGAGATAGAGATAGAGATAGAGAGAGGGATAGAGATAGAAGGGATCAGAATCGACATCACCATGATGTGGATCTTGATTCTACTGTTGAGGTGCTTGGCGACAGTGCACCACCTGAATGGGCGTTGCTACTCATTGGTTGCCTCATTGGACTCACCACTGGCCTCTTTGTTGCCTTTTTCAATAAAGGGGTGCATATAATACATGAATGGGTATGGGCTGGTACTCCAATTGAGGGTGCTGCCTGGCTTCGAATTCAGAGATTGGCTGATACATGGCATCGAATCCTTTTAATACCTGTCACTGGAGGAGTCATTGTTGGAATGATGTGTGGTTTACTGGAAATACTGGACCAAATAAAGCAATCCACTGGCTCTCAAACACAAGGTTTTGATTTTCTTGCAGGAGTCTTTCCAACGATAAAGGCTATTCAGGCTGCAGTTACTTTAGGTACTGGCTGTTCATTGGGGCCTGAAGGTCCTAGTGTTGATATTGGGAAGTCATGTGCCAACGGATTCTCGCTAATGATGGAACACAACAGAGAAAGGAAAATAGCACTTGTTGCAGCTGGTGCAGCAGCTGGAATTTCGTCAGGCTTCAATGCACCAGTTGCTGGTTGTTTCTTTGCTATTGAAACTGTGTTGAGGCCTCTCCGTGCAGAGAACTCTCCCCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATCTCATCAACTGTATCAAATGTTTTACAGGGGATCAAATCAGCTTTTACAATTCCCGAGTATGATTTGAAATCTGCTGCTGAGCTACCTTTATACCTGATATTGGGAATGCTTTGTGGTGTTATTAGTGTGGCCATGACTCGTTTGGTTGCTTGGTTCACCAAATTGTTTAGGATTATTCAGGATAAGTTTGGCATTCCTACTGTGGTCTGCCCTGCTTTAGGTGGCTTTGGAGCTGGGATTATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTTTACGTACCGGAAAGAGTGCTTCAGCCCCTGGAATATGGCTTCTAACTCAATTGGTAGTTGCTAAGGTTATTGCAACAGCTCTTTGCAAGGGATCTGGACTAGTTGGTGGTCTTTATGCACCAAGTTTAATGATAGGTGCTGCAGCTGGTGCTGTATTTGGAGGCTTTTCTGCTGAAGTTATTAATTCAGCAATTCCCGGAAATGCTGCTGTTGCTCAGCCCCCAGCATATGCTCTGGTTGGAATGGCGGCTACATTAGCATCTGTTTGTTCTGTTCCTTTGACTTCAGTTCTACTTCTGTTTGAGCTGACAAAAGATTATAGGATACTGCTTCCACTCATGGGAGCTGTTGGATTGGCAATATGGGTTCCCTCAGTGACAAACCAGGGGAAGGAGAGTGATACACCTGATACAAGTAGTTCATCAAGAGGATATTCTCCAGTTTCACATGCTGGAGATGATAATGAGGATAGCTGGAGACAAGCCAATGATGGGAATGATTTAGAGCTCCGTATTGTTGGGAATGGCGCCGATCATGAAGCAATTGATAAGGAACTGCTTCTGGAAAATCTTCAGGTTTCTCAGGCAATTTCAAAACAATATTTTAAGGTTTTGTCATCTGCAACCTTGAAAGATGCAATAAAATGCATGCATGACAGCCAGCAGAATTGTGTGCTGGTGGTTGATAAAGAAGATTTTCTAGAAGGAATATTGACATATGGTGACATAAGAAGGTGTCTGTCCCAGGAGTCTACTGACCCTTTGAAGGGTGATTTAGTGGTTCTGGATGCGAACACGTGCCTTGTTTCCTCGGTTTGTACTCGAGGGATGAGCTATCGTGGACGAGCACGAGGAATTTTGACCTGCTATCCAAATACTAGCTTGGCTATGGCCAAAGAGTTGATGGAGGCCAAGGGCATTAAGCAATTACCAGTAGTTAAACGTGGTGGAGATCAGAGTAGAGAAAGAAAGAGGAGAATTGTTGGTCTTCTTCATTATGATGCACTATGGCAATGTCTCAGGAAAGAGATTAATCACAGGCAAAAAAATATGACAGATAACAGTTTGGCAGTGACAACAACGAATGGACATTGA 2289 0.446 MAEGDQRRLLGLSEDDVEARGSELAVVNGGGGGGNNSNSKGLRDLLRLSGHRQSFKRIEKEDDRDRDRDRERDRDRRDQNRHHHDVDLDSTVEVLGDSAPPEWALLLIGCLIGLTTGLFVAFFNKGVHIIHEWVWAGTPIEGAAWLRIQRLADTWHRILLIPVTGGVIVGMMCGLLEILDQIKQSTGSQTQGFDFLAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEHNRERKIALVAAGAAAGISSGFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGIKSAFTIPEYDLKSAAELPLYLILGMLCGVISVAMTRLVAWFTKLFRIIQDKFGIPTVVCPALGGFGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLTQLVVAKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEVINSAIPGNAAVAQPPAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNQGKESDTPDTSSSSRGYSPVSHAGDDNEDSWRQANDGNDLELRIVGNGADHEAIDKELLLENLQVSQAISKQYFKVLSSATLKDAIKCMHDSQQNCVLVVDKEDFLEGILTYGDIRRCLSQESTDPLKGDLVVLDANTCLVSSVCTRGMSYRGRARGILTCYPNTSLAMAKELMEAKGIKQLPVVKRGGDQSRERKRRIVGLLHYDALWQCLRKEINHRQKNMTDNSLAVTTTNGH* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0054 762 CDD Voltage_gated_ClC 116 518 - -
Pvu5g0054 762 ProSiteProfiles CBS domain profile. 675 747 IPR000644 -
Pvu5g0054 762 Pfam Voltage gated chloride channel 196 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu5g0054 762 Pfam CBS domain 683 730 IPR000644 -
Pvu5g0054 762 Pfam CBS domain 591 645 IPR000644 -
Pvu5g0054 762 PRINTS Chloride channel signature 204 223 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu5g0054 762 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu5g0054 762 PRINTS Chloride channel signature 432 452 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu5g0054 762 PRINTS Chloride channel signature 473 489 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu5g0054 762 PRINTS Chloride channel signature 491 510 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu5g0054 762 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 35 751 - -
Pvu5g0054 762 SUPERFAMILY CBS-domain pair 589 743 IPR046342 -
Pvu5g0054 762 Gene3D Clc chloride channel 90 533 - -
Pvu5g0054 762 SUPERFAMILY Clc chloride channel 101 525 IPR014743 -
Pvu5g0054 762 MobiDBLite consensus disorder prediction 21 43 - -
Pvu5g0054 762 SMART cbs_1 598 646 IPR000644 -
Pvu5g0054 762 SMART cbs_1 683 739 IPR000644 -
Pvu5g0054 762 MobiDBLite consensus disorder prediction 526 560 - -
Pvu5g0054 762 ProSiteProfiles CBS domain profile. 595 653 IPR000644 -
Pvu5g0054 762 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 35 751 - -
Pvu5g0054 762 CDD CBS_pair_voltage-gated_CLC_euk_bac 596 735 - -
Pvu5g0054 762 MobiDBLite consensus disorder prediction 57 82 - -
Pvu5g0054 762 MobiDBLite consensus disorder prediction 526 546 - -
Pvu5g0054 762 Gene3D - 575 738 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0054 Pvu-Chr5 404608 413991 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0054 - - gmx:100787625 1294.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0054 5 404608 413991 Pvu5g0054 5 404608 413991 ECH