Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0052 ATGGAAAGTGAAAGAGAGGACAAGAACAAAGGCACCGATTCAACACACACTGCCATCTCTAGCACACTTAAAATCAAGATTGTGAGCTGCAGCAAACAAGGTGGAGAGAGTTTAGACAACTCAAACTTGCCTTCACCAAACATAAACAATGCCATAGAGTCATCACCTTATGGTTCTCCTCTTGTGTCACCACCTTCATCAGCATTTGTTTCAGCATTGCAGTCTCCATATATATCTCCAAGGGCCATTATACCAGACCTACCTAATGGATCTCCTTTGGAAAACCAACCACCACTACTAACAACAACCACTTCCACCACCAACCCTTCCACCCCTGAAGATGTACCAAGCAGTTCCTACACTCCCCCTTCAGATCAATATGAGTTCTCTGATGCTGACACAAAGCTCAAATATGTGACATGTGTTCCTGAACAGGCTCCTCCACGCATCTCATTCTCATTTCCAGTCCCTAGAATTTCCTTCGCAAAAGGCCCTATCTCACCAGCTACCAATGCCAAACTCAGAAGCTGTGATGTCTACATTGGATTCCATGGCCAGAACCCCAACTTGGTGCGCTTCTGCAGGTGGCTTAAGTCTGAGCTTGAGCTTCAAGGGATCGATTGCATGCTTGCTGATAGAGCAAAGTACTCAGACAATCAGAGCCATGAGATTGCTGATGGAGTCATTTGCTCAGTGGCTTTTGGAGTGGTGGTTGTTACAAGTTCCAGCTTTCTCAACCATTTTAGCATGGAGGAGGTGAGATTCTTTGCTCAAAAGAAGAACTTGATTCCTCTCTTGTTTGACACAGGACCTGCAGAGATTATGGCTCTTCTTAACTGCAAATCAATTGACAAAGAATGTAAAGAGGCAATAGATGGACTTATGAAGTGCAATGAATTCAATCTAGAGGCTAATGATGGTAATTGGCGAAGCTGCATAGCGAAAGCTGCGGGTATTTTAAGAGCAAGACTTGGTAGGAAGAATGCTGAGCAGAAGGATAATATGCAAGGACTTGAGAATTTACCCTTTCCAAGGAACACATACTTTGTAGGAAGAGAGAAGGAGATTATGGAGATTGAGGGTCTTTTTTTTGGTCGAGGGAGTTGCATGGAAGTCCAAGATCATTGTAGGGCAATCACCAAAGGAGAAGCTAGTGGAAGTGGACAATCTGAAGGTCTTGCAGATGAGGAAAGTGAACCAGTGATAGGTAGGTGTGGGAGGTATATTAGTCTAGAGATGGGGAGAAGCAAAGAACCAACTTTAGAGGCTTGGGTAGAACCGATCATAGGAAACAACTCTTTGAAGAGGTTGAAGAATAAGAAATCAAAGAGTGGAAACTACAAGAGCATGTGTAGCAGTGTGATTTGCATTAATGGGGTTTCTGGGATTGGAAAGTCAGAGCTGGCACTAGAATTTGCTCAAAGATATCACCAGAGGTACAAAATGGTCTTGTGGGTTGGTGGTGAAGCCAGGTATCTGAGGCAGAACATATTGAACTTGTCTCTCAATTTGGGATTGGATGTTGGTGCTGATTCTGAAACCGAAAGGGGTAGGATTCGTAGCTTTGAGGATCAAGAATTTGAGGCATTCAAGAGAGTGAAGAGGGAACTGTTTGGTGAAACTCCTTACTTGTTGATAATTGACAATCTTGAAACAGAAGTCGAATGGTGGGAAGGGAAGGATCTGTATGACTTGATACCAAGAAACACAGGAGGCACACATGTGATTGTTACTACTAGATTGTCCAAAGTAATGAGCTATGATACCATTCAGCTTCCACCTTTGCCATTATCTGATGCAATGATTCTGATGATAGGAAGAAAAAAGAAAGAGTATTCGGCAGATGAAATAGACTTGCTTGAAAAATTCAATGAGAAACTTGGAAGGTTGAGCTTTGGTTTGTGGATGATTGGTTCACTGTTGGCCGAACTTTCAATAGGGCCTTCTTGTCTCTATGAGGCCATTAACCAGGTGCCACTCAATGAAGATTCAAACTCTTCCTATATGAGCATTGCAGAAGGGCAATGGTGCAAGAGCAACCCTTTTCTCGTGAAGACCCTTCTCTTTTGTTTGGAAACTTTGGAGAAAACTAAAGCTAAAGGGAACCTCTTGGCCATAAGAATGCTGCTTGTAAGTGGCTGGTTTTCCCCCTCTCCCATTTCAGCCAGTTTATTAGCTAATGCAGCAAAGAGTATTCCTACAGTGGAAAGCCGTTTCAAGAAGTGGACCAAATCTCTGAGCCTAGCAACCAGTTGTTTATCACCACGGACATGGAAAAATGAAGAAGATTCAGCAATGGTTCTTGTGAAAATGGGATTGGCTAGGAGGGCCAATCAACATGATGGATGTTGGCTTCATTTCCACCCCATAACACAAGCATTTTCCAAAAGAAAAGGTGGTTTGCAATATGCCAAGGCTGCAATTCAAGGAGTGAGGAAAATGGGGAGTCAAGTTAACTCAGATCACTTGTGGGCCTCAGCTTTCCTTGTATTTGGGTTCAAATCTGAGCCCCCCCTGGTGCAGCTGAAGGCAATTGACATGGTTGTGTACATCAAGAGAACAGCTCTCCCTCTAGCAATTCAAGCCTTCACCACTTTCTCAAGATGCAATTCATCCTTGGAGCTCTTGAGGGTGTGCACCAATGCACTGGAGGAAGTTGAGAAGTCTTTTGTGTCTCAAATCCAAGATTGGTCTTCCCATGGTTCAGTTTGTTGGAAAAGGAGGCTGCAAAGAGGCCAAAAAGTGGATGAATATGTGTGGCAGGATGTGACCTTGTTGAAGGCAACACTGCTGGAGACAAGAGCAAAGTTGCTAGCAAGAGGGGGGCATCTAGACAGTGCCAAGGAACTGTGCAGAACATGCATCAGTATCAGAACTGTGATGCTTGGCCATAACCATGCACACACCTTGGCTGCTCAAGACACATTGGCAAGGTTGGTGAGAATGAGGAGCAAGATATGA 2961 0.439 MESEREDKNKGTDSTHTAISSTLKIKIVSCSKQGGESLDNSNLPSPNINNAIESSPYGSPLVSPPSSAFVSALQSPYISPRAIIPDLPNGSPLENQPPLLTTTTSTTNPSTPEDVPSSSYTPPSDQYEFSDADTKLKYVTCVPEQAPPRISFSFPVPRISFAKGPISPATNAKLRSCDVYIGFHGQNPNLVRFCRWLKSELELQGIDCMLADRAKYSDNQSHEIADGVICSVAFGVVVVTSSSFLNHFSMEEVRFFAQKKNLIPLLFDTGPAEIMALLNCKSIDKECKEAIDGLMKCNEFNLEANDGNWRSCIAKAAGILRARLGRKNAEQKDNMQGLENLPFPRNTYFVGREKEIMEIEGLFFGRGSCMEVQDHCRAITKGEASGSGQSEGLADEESEPVIGRCGRYISLEMGRSKEPTLEAWVEPIIGNNSLKRLKNKKSKSGNYKSMCSSVICINGVSGIGKSELALEFAQRYHQRYKMVLWVGGEARYLRQNILNLSLNLGLDVGADSETERGRIRSFEDQEFEAFKRVKRELFGETPYLLIIDNLETEVEWWEGKDLYDLIPRNTGGTHVIVTTRLSKVMSYDTIQLPPLPLSDAMILMIGRKKKEYSADEIDLLEKFNEKLGRLSFGLWMIGSLLAELSIGPSCLYEAINQVPLNEDSNSSYMSIAEGQWCKSNPFLVKTLLFCLETLEKTKAKGNLLAIRMLLVSGWFSPSPISASLLANAAKSIPTVESRFKKWTKSLSLATSCLSPRTWKNEEDSAMVLVKMGLARRANQHDGCWLHFHPITQAFSKRKGGLQYAKAAIQGVRKMGSQVNSDHLWASAFLVFGFKSEPPLVQLKAIDMVVYIKRTALPLAIQAFTTFSRCNSSLELLRVCTNALEEVEKSFVSQIQDWSSHGSVCWKRRLQRGQKVDEYVWQDVTLLKATLLETRAKLLARGGHLDSAKELCRTCISIRTVMLGHNHAHTLAAQDTLARLVRMRSKI* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0052 986 PANTHER DNA REPAIR PROTEIN RADA 19 986 - -
Pvu5g0052 986 Gene3D - 426 591 IPR027417 -
Pvu5g0052 986 MobiDBLite consensus disorder prediction 94 127 - -
Pvu5g0052 986 Pfam NB-ARC domain 434 586 IPR002182 GO:0043531
Pvu5g0052 986 SMART AAA_5 451 609 IPR003593 -
Pvu5g0052 986 Coils Coil 321 341 - -
Pvu5g0052 986 MobiDBLite consensus disorder prediction 32 65 - -
Pvu5g0052 986 MobiDBLite consensus disorder prediction 83 127 - -
Pvu5g0052 986 Gene3D - 162 292 IPR035897 -
Pvu5g0052 986 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 19 986 - -
Pvu5g0052 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 657 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0052 Pvu-Chr5 386437 390455 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0052 - - gmx:100781208 1764.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0052 5 386437 390455 Pvu5g0052 5 386437 390455 ECH