Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0045 ATGAATGTTACAAATAAGCCAAACCCAGATGGTTCCACAAATGGGTTTCAGTCACAGTTTCAACACCAACACAGTAATGGGTGGGAGGGTTCATCTACACACCCACCCTCTAAGCCTTATCCTGCACCAACAGCTAGCTACCAGGACATTGTTCGTGATGAAAACCTCTTCTGGGAAAAGCTTCAAGCTTTTCACCAATCACTTGGCACCAAATTTAAGGTTGTCATTGTGGGAGGAAAGTCACTTGATCTACATCGCCTTTTTCTGGAAGTTACATCTCGTGGTGGGATCGAAAAGGTGATTGTTGATCGTAAGTGGAAGGAAGTGATTCTGACCTTCAACTTCAAAGATACCATAACGAGTGCATCATTTGTGGTGCGCAAATCCTATCTATCAATGCTTTATCACTTTGAGCAAGTGTATTATCTTGGGAAGCAAGGCTTTCCTTCCCAAACACCTGATATTATGATTAGAGGCCAACCAGGCCTTCCCAATAGCTCCCCAACCATTCTGGAGGTTGCTGATGTGAATGATTCACCTCTTCAGGCTACTCCAGTGCATGGATATGATGGTGTGGTTTCTGGAACAATTGATCTGAAATTTGCCGGTGGATACATAGTCACAGTGACTGTGGGTTCCGAGGAGCTGAAAGGTGTCCTGTTTCATGTTCCTGATAACATGTCCCAGAGTTCTCATACCGAAGGCAGGCCTAGTTCACAGAATCATGGTGAAGGCACATCCGGGTCACAGAGTCGAAAGAGAGCGAAATATACACCACGTGATCCATTCCGGCCGAAATCAAACAGGAGTGGTTACAACTTTTTCTTTGCTGAGAATTATGCCATGCTGAAGCCCTCTTATCATGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTCTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGGTGAAAGATAAGGAAAGATATAGAACTGAACTGATGGAGTACAAATCCAACAATTCAACTCCAAATGCTCAATAG 1026 0.4396 MNVTNKPNPDGSTNGFQSQFQHQHSNGWEGSSTHPPSKPYPAPTASYQDIVRDENLFWEKLQAFHQSLGTKFKVVIVGGKSLDLHRLFLEVTSRGGIEKVIVDRKWKEVILTFNFKDTITSASFVVRKSYLSMLYHFEQVYYLGKQGFPSQTPDIMIRGQPGLPNSSPTILEVADVNDSPLQATPVHGYDGVVSGTIDLKFAGGYIVTVTVGSEELKGVLFHVPDNMSQSSHTEGRPSSQNHGEGTSGSQSRKRAKYTPRDPFRPKSNRSGYNFFFAENYAMLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGVKDKERYRTELMEYKSNNSTPNAQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0045 341 SMART bright_3 52 143 IPR001606 GO:0003677
Pvu5g0045 341 Pfam ARID/BRIGHT DNA binding domain 55 138 IPR001606 GO:0003677
Pvu5g0045 341 ProSiteProfiles ARID domain profile. 51 142 IPR001606 GO:0003677
Pvu5g0045 341 SUPERFAMILY HMG-box 264 335 IPR036910 -
Pvu5g0045 341 CDD HMGB-UBF_HMG-box 265 328 - -
Pvu5g0045 341 MobiDBLite consensus disorder prediction 225 268 - -
Pvu5g0045 341 MobiDBLite consensus disorder prediction 225 253 - -
Pvu5g0045 341 Gene3D High mobility group box domain 248 340 IPR036910 -
Pvu5g0045 341 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Pvu5g0045 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 30 340 - -
Pvu5g0045 341 SUPERFAMILY ARID-like 49 152 IPR036431 GO:0003677
Pvu5g0045 341 SMART ARID_2 48 138 - -
Pvu5g0045 341 MobiDBLite consensus disorder prediction 1 33 - -
Pvu5g0045 341 MobiDBLite consensus disorder prediction 1 45 - -
Pvu5g0045 341 Gene3D - 43 152 IPR036431 GO:0003677
Pvu5g0045 341 CDD ARID_HMGB9-like 53 138 IPR045303 GO:0003677
Pvu5g0045 341 SMART hmgende2 264 333 IPR009071 -
Pvu5g0045 341 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Pvu5g0045 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 30 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0045 Pvu-Chr5 323371 327501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0045 45 337 ARID Transcription Factor Family AT3G13350 53.242 3.35e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pvu5g0045 ARID 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0045 - - gmx:100793029 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0045 5 323371 327501 Pvu5g0045 5 323371 327501 ECH