Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0039 ATGTCGATGCTGCTGAGGAAGGCTTGGGAAATGGTGTTGTGGAGATCTGATTCATCAACATCAGCATCAGCATCATCATCAACAACAACAACTACAACAAGATTTTCACTGGAAGTGCCACGTTCTGACATGGGTGAATTGGAGCAGCTACCCAGTGACATCTTGATGCAAATTCTGAAGCTTTTGGGTCCAAAAGCGGTTGCAAAATTGAGTGTGGTTTGCAAGAGTTTGAGATCCATTGTCTCTTATAACAGACTTTGGATTTACTTCATTCAGACCCATCAGGCTGAACCTTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGTTCTGGCTACCCTCTTCCAGCTTACGTTGGTCACTGGCCCCAGCTATCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATTATTGATGGTGGTTCTGGCTACTGCAAATTTGGCTGGAGCAAATACGAATGCCCATCTGGTCGATCAGCAACATTTTTGGAGTTTGGCAACATTGAGTCTCCAATGTATACTAGGCTTCGACATTTTTTCGCAACTATTTATAACAGGATGCAGGTGAAACCAAATAAACAACCAGTTATTGTTTCAGTACCAATATGTCATTATGAAGATACTCAATCAGCAAAAGCTTCAAGACAACAGCTTAAAGACGCAATTTACGCCTCCTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTACGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACTTCTGTAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACCGGATTTCTCAGGGAGAAGATGCAATTGAACAACTTAACTTTTCAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTTGCACATGATTATGAAGCTGAGCTATCAAAAGATACAAAAGCATCATATGAAGCTGCAGGAGAAGGATGGTTTACCCTCTCAAAAGAGAGGTTTCAGACACCAGAGATCTTATTCCAGCCTCATTTTGCTGGAGTGCAAGCCATGGGTCTGCACCAAGCAATAGCACTTTGTGTGGAACATTGCCATTCTGCAGATTTACCAGGTGACAACGATTGGTACAAGACTATAGTTTTATCAGGGGGAACTGCATGCCTACCTGGTTTGGCAGAAAGGGTAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACATGTTCAAAGGAATTAGAGTCATTCCTCCTCCATATGGTGCTGATACACCATGGTTTGGAGCTAAGATTATTAGCAATTTGAGCACCTTTCCTGGTCATTGGTGTGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAGCCTCATATGGTGA 1440 0.4299 MSMLLRKAWEMVLWRSDSSTSASASSSTTTTTTRFSLEVPRSDMGELEQLPSDILMQILKLLGPKAVAKLSVVCKSLRSIVSYNRLWIYFIQTHQAEPSGDSVFFAETTLSSGYPLPAYVGHWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYECPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYEDTQSAKASRQQLKDAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLTFQSLYTVRTLKEKLCYVAHDYEAELSKDTKASYEAAGEGWFTLSKERFQTPEILFQPHFAGVQAMGLHQAIALCVEHCHSADLPGDNDWYKTIVLSGGTACLPGLAERVEKELHALLPPYMFKGIRVIPPPYGADTPWFGAKIISNLSTFPGHWCVTKKQFRQKPRLSLIW* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0039 479 Gene3D - 184 471 - -
Pvu5g0039 479 PANTHER ACTIN 92 476 IPR004000 -
Pvu5g0039 479 SMART actin_3 139 469 IPR004000 -
Pvu5g0039 479 Gene3D Actin; Chain A, domain 4 289 372 - -
Pvu5g0039 479 SUPERFAMILY Actin-like ATPase domain 141 261 IPR043129 -
Pvu5g0039 479 SUPERFAMILY F-box domain 39 98 IPR036047 GO:0005515
Pvu5g0039 479 ProSiteProfiles F-box domain profile. 44 90 IPR001810 GO:0005515
Pvu5g0039 479 Gene3D - 36 136 - -
Pvu5g0039 479 SMART fbox_2 50 90 IPR001810 GO:0005515
Pvu5g0039 479 Pfam Actin 188 470 IPR004000 -
Pvu5g0039 479 Pfam F-box domain 48 88 IPR001810 GO:0005515
Pvu5g0039 479 Gene3D - 246 444 - -
Pvu5g0039 479 PANTHER MACRONUCLEAR ACTIN 92 476 - -
Pvu5g0039 479 CDD NBD_sugar-kinase_HSP70_actin 142 286 - -
Pvu5g0039 479 SUPERFAMILY Actin-like ATPase domain 255 470 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0039 Pvu-Chr5 285677 294372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0039 188 471 Cytoskeleton Gene Families AT3G12110 34.247 2.45e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0039 K16616 - gmx:100791973 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0039 5 285677 294372 Pvu5g0039 5 285677 294372 ECH