Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0018 ATGGAGGCTGCTCCTCCTTCCAACGATCTGTGTTCAGTGTGTCATGGCAACTTTCACCTTCCCTGCCAAGCCAATTGCTCTCACTGGTTTTGTGCAAATTGCATCATGCTGGTGTGGCAGCACGGATCAGGGACAAGCTCTTGCAAATGCCCTCTTTGTCGGCGACCCATCACTCTCTTAGTCCCCACCGAACACTCTCTCAGGCAGCGTCACGACCCTGAAGTTGCTCAGATTCTCTCCAAAATTCATGCTTACAACCGTGTCTTCGGTGGCCAACCCTCCTCTTTTTTTCAGAGACTGCAAGATCTTCCTTTTCTGCTGCACAGGCTCTTGCGGGAGTTCCTCGACCCTCACAGATCCCTTCCTCTTGTCGTCCGTGCCCGTGTCTTTATTGCTATGATAGCAAGTTTTCTATACATCCTCAGCCCAATTGACTTCATTCCTGAAGGAGTATTAGGAATAGTTGGTCTCTTAGATGATGTCTTAATTGGGCTCATCTGCTTCCTACATGTTGCTGCCCTTTATAGATCAGTTCTCTACCTCCGTCATGGAGGTTCCTGA 561 0.492 MEAAPPSNDLCSVCHGNFHLPCQANCSHWFCANCIMLVWQHGSGTSSCKCPLCRRPITLLVPTEHSLRQRHDPEVAQILSKIHAYNRVFGGQPSSFFQRLQDLPFLLHRLLREFLDPHRSLPLVVRARVFIAMIASFLYILSPIDFIPEGVLGIVGLLDDVLIGLICFLHVAALYRSVLYLRHGGS* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0018 186 SMART ring_2 11 53 IPR001841 -
Pvu5g0018 186 SUPERFAMILY RING/U-box 7 62 - -
Pvu5g0018 186 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Pvu5g0018 186 PANTHER BNAC07G13660D PROTEIN 5 186 - -
Pvu5g0018 186 PANTHER UNCHARACTERIZED 5 186 IPR038896 GO:0061630
Pvu5g0018 186 ProSiteProfiles Zinc finger RING-type profile. 11 54 IPR001841 -
Pvu5g0018 186 Pfam Protein of unknown function (DUF1232) 131 163 IPR010652 -
Pvu5g0018 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 91 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0018 36 186 C3H Transcription Factor Family AT1G72175 69.536 3.62e-64 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0018 K15707 - gmx:100306204 317.005