Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0007 ATGGAGGGTCGGCAGAGAAACTACGGCGGAGGGTCGGCGCCGGCGGAGAGGGAATCTAAGCATTTTCTGAAGATCATACTTCCCTCTGCCATTCATGCTACCCAAATGAGAATTCCCGAGGAGTTTATAAAGAGATTTGGAGATGAACTATCAACTGTTGCTACAATTACTGTTCCTGATGGTCGTGTTTGGAAAATGAGGCTGAAGAAATGTGGAAAAGATGTTTTCTTCAGCAGCAAATGGCGAGAGTTTGTAAACTACTATTCTCTGGGGTATGGTTCCCATCTAATTTTCAGATATGTAGGGAACTCAAAATTTTGTGTTCTTATATTTGATATTACTGCTGCTGAGATTTGTTATCCTCCCCAAACACGGGGCACTAATGAACCAAACTCGGAGAATTGGAAGAGATCCAAGTTTGAGGATCAGCAGCAGCACCAAGAGCTTGTGGTGGGGAATGGGGTAGAAACTACTGATGAAGATTATGTGAATTTAATACGTCCGAGTCAGACTAAAGGAAGGAAGAAAAAATGTTATTATTCTCATGGGAAACAACTCAAAAGTGGATGCAGTGAAAACCACTCTTCTTGGGAGATAACAAAGGATGTTGCTACTGCTAGTGATAGATTAATTGCAAAAAACCCTTTTGTTACTTGTACCATCAAGTCTTCTCGATTGTATGTGTCAAGTGAATTTGCTGGCAAGTATCTGAAGCCAGGTGTTGGTACGATGCTCCAAAATAGTAATGGAGAGCAGTGGGAAGTTTCTTGCTCATGTCATAGCCGTAGCAGAGCAATGATAATATCTAAGGGATGGGCTAAATTTGTGAGGGACAACGATCTATCAGAAGGAGATTTATGTGTGTTGGAGTTGATAAAGAGGGACCCCATTGTGCTAAAATTTACTGTGCGTGGCGAAGCTCAATATTATGACGTTGATGTTTGA 945 0.4159 MEGRQRNYGGGSAPAERESKHFLKIILPSAIHATQMRIPEEFIKRFGDELSTVATITVPDGRVWKMRLKKCGKDVFFSSKWREFVNYYSLGYGSHLIFRYVGNSKFCVLIFDITAAEICYPPQTRGTNEPNSENWKRSKFEDQQQHQELVVGNGVETTDEDYVNLIRPSQTKGRKKKCYYSHGKQLKSGCSENHSSWEITKDVATASDRLIAKNPFVTCTIKSSRLYVSSEFAGKYLKPGVGTMLQNSNGEQWEVSCSCHSRSRAMIISKGWAKFVRDNDLSEGDLCVLELIKRDPIVLKFTVRGEAQYYDVDV* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0007 314 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Pvu5g0007 314 Pfam B3 DNA binding domain 221 302 IPR003340 GO:0003677
Pvu5g0007 314 Pfam B3 DNA binding domain 22 112 IPR003340 GO:0003677
Pvu5g0007 314 Gene3D - 198 306 IPR015300 -
Pvu5g0007 314 SUPERFAMILY DNA-binding pseudobarrel domain 216 295 IPR015300 -
Pvu5g0007 314 Gene3D - 13 115 IPR015300 -
Pvu5g0007 314 ProSiteProfiles B3 DNA-binding domain profile. 211 307 IPR003340 GO:0003677
Pvu5g0007 314 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Pvu5g0007 314 CDD B3_DNA 20 112 IPR003340 GO:0003677
Pvu5g0007 314 PANTHER B3 DOMAIN-CONTAINING 16 153 - -
Pvu5g0007 314 PANTHER B3 DOMAIN-CONTAINING 200 303 - -
Pvu5g0007 314 SMART B3_2 22 114 IPR003340 GO:0003677
Pvu5g0007 314 SMART B3_2 216 307 IPR003340 GO:0003677
Pvu5g0007 314 CDD B3_DNA 220 304 IPR003340 GO:0003677
Pvu5g0007 314 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 16 153 - -
Pvu5g0007 314 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 200 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0007 Pvu-Chr5 56168 57866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0007 22 303 B3 DNA Binding Superfamily AT3G18990 31.940 1.15e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu5g0007 B3 8.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0007 - - vun:114183160 501.901