Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1879 ATGGCACTCCCCACTTCTTTGACTCCATGGCCATTTACATTTCTCCTATCATCATCATTGTTATTCTTATCCCACATTCTCCTCATTGTCACTGCTTCTTCAGACAAAGAATTGCTCCTCAAATTCAAAAGCTCCATTGAAAACAACCATGTATTGTCTTTGTGGAATGAATCTGTGCATCCATGTTCAGGTCAAGCACCTAACTGGCCTTACGTTCAGTGTTACAAGGGACATGTGTGGGGGTTGACGCTCGAAAACATGGGCCTCAAAGGGGTCCTTGATGTCCAAGCCCTGGAGGAGTTACCCTTTCTCCGAACCCTAAGCCTCATGAACAATGATTTTGACACTGAATGGCCTGACATGAACGATATACTGGGTTTGAAGACCCTTTATCTTTCAAATAACAAGTTTTATGGAGAGGTTCCTGCTCAGGCTTTTCAGGGCATGAAATGGTTGAAGAAAATCCATTTGTCCCACAACCAGTTTACAGGTCTTATTCCAATTTCCCTCACCGCCATGCCTAGGCTTGTGGAGTTGAGGCTCAATGCAAACAATTTCTCCGGCTCCATACCCGATTTTCCTCATTCATTGCAATCTTTTAGTGTAGCTGATAATCAATTAGAGGGAGAAATACCAAACAGCCTCCGTGACATGCCTCTTTCAGCTTTCTCTGGTAATGAAGGGCTATGTGGAGCACCGTTAGGAGCATGCTCCTCCAAAAGGAAATCTCCTCTGAGTATTATTGTGGCTGTGGTTCTTGTTATTGTAGCACTGGGTGTTATTGGAGCAGTAGTATTGTTAGTCCTTCGTCGGAGAAGGGAGCAGGAGCCAGATATGTCTGCGGAAAATCCATCACCAATGTCCCACAAGAAAGAAAGAAGTAGGGAACCATCAGATGAAGGAAGTCACAGGTCCCAAACCTCGAGCCGCAACAGTGGAAGAGACATCACGAGGCTATCGTTTGTGAGGGATTACAGAGATCAGTTTGATTTGCATGAACTACTTAGAGCCTCAGCTGAGATACTGGGCAGTGGCTATTACAGCTCTTCCTACAAGGCTTCTCTGTTAAATGGAGCAGTGATGGTGGTGAAGAGATTCAAGAAAATGAACAATTTGGGGAGGGAAGAGTTTCAGGAGCACATGCGACGCATTGGACGGTTAAATCATCCTAATCTGCTTCCTCTCGTTGCCTACTACTACAGAAAGGAGGAGAAACTCTTCGTTACTGACTTTGTTCACAATGGCAGCTTGGCTATTCGCCTCCACGGATACGAATCTCTAGGGCAACCAAGCCTGGACTGGGCAAGTAGGCTGAAGATAGTGAAAGGCATAGCAAAAGGACTTGAATATCTTTACTCGGAGATGCCAAGGTTAATTGCGCCCCATGGACATCTAAAGTCCTCCAACGTTCTTCTGAATGAATCTTTGGAGGCCGTTCTGACGGACTATGGGTTGGTACCAGTGATAAACCAAGACCTTGCTCCTGACATCAATGTGATCTATAAGTCCCCAGAGTATTTGCAGCATGGTCGCATTACAAAGAAGACTGATGTGTGGTGTCTTGGGATACTTATTTTGGAGATTCTAACGGGAAACCTTCCTGCTAACTTTCTACAAGGGAAAGGAAGTGAGTTGAGTTTGATAAACTGGGTCCATAATGTTGCCTCAGAAAGCACTGATGAGGTGTTTGATAAGAACATGGAGGTAACAAAAAACAGTGAGAGGGAGATGATAAAGCTTTTGAAGATTGCATTGGCTTGTTGTGAATGGGATGTGGACAAGAGATGGGACCTTCAAGAAGTTGTAGATAGAATTCATCAAGTTAAGGAAAGAGATAATGAGGATGATAATCCTTCTTCTAATGCTAGTGAAGTTGATGTGAAGCAGAGTGAGTCAGGTGAAGCTAGTTTCTCCATAGATGGTTGA 1926 0.4424 MALPTSLTPWPFTFLLSSSLLFLSHILLIVTASSDKELLLKFKSSIENNHVLSLWNESVHPCSGQAPNWPYVQCYKGHVWGLTLENMGLKGVLDVQALEELPFLRTLSLMNNDFDTEWPDMNDILGLKTLYLSNNKFYGEVPAQAFQGMKWLKKIHLSHNQFTGLIPISLTAMPRLVELRLNANNFSGSIPDFPHSLQSFSVADNQLEGEIPNSLRDMPLSAFSGNEGLCGAPLGACSSKRKSPLSIIVAVVLVIVALGVIGAVVLLVLRRRREQEPDMSAENPSPMSHKKERSREPSDEGSHRSQTSSRNSGRDITRLSFVRDYRDQFDLHELLRASAEILGSGYYSSSYKASLLNGAVMVVKRFKKMNNLGREEFQEHMRRIGRLNHPNLLPLVAYYYRKEEKLFVTDFVHNGSLAIRLHGYESLGQPSLDWASRLKIVKGIAKGLEYLYSEMPRLIAPHGHLKSSNVLLNESLEAVLTDYGLVPVINQDLAPDINVIYKSPEYLQHGRITKKTDVWCLGILILEILTGNLPANFLQGKGSELSLINWVHNVASESTDEVFDKNMEVTKNSEREMIKLLKIALACCEWDVDKRWDLQEVVDRIHQVKERDNEDDNPSSNASEVDVKQSESGEASFSIDG* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1879 641 ProSiteProfiles Protein kinase domain profile. 336 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1879 641 SUPERFAMILY L domain-like 33 220 - -
Pvu4g1879 641 MobiDBLite consensus disorder prediction 275 303 - -
Pvu4g1879 641 Pfam Protein kinase domain 339 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1879 641 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515
Pvu4g1879 641 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 23 620 - -
Pvu4g1879 641 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Pvu4g1879 641 PANTHER LRR RECEPTOR-LIKE KINASE 23 620 - -
Pvu4g1879 641 Gene3D Transferase(Phosphotransferase) domain 1 412 633 - -
Pvu4g1879 641 MobiDBLite consensus disorder prediction 620 641 - -
Pvu4g1879 641 Gene3D Ribonuclease Inhibitor 27 121 IPR032675 -
Pvu4g1879 641 Gene3D Ribonuclease Inhibitor 122 244 IPR032675 -
Pvu4g1879 641 MobiDBLite consensus disorder prediction 608 641 - -
Pvu4g1879 641 MobiDBLite consensus disorder prediction 275 314 - -
Pvu4g1879 641 Gene3D Phosphorylase Kinase; domain 1 302 411 - -
Pvu4g1879 641 SUPERFAMILY Protein kinase-like (PK-like) 339 607 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1879 Pvu-Chr4 45763426 45767079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1879 34 639 Receptor kinase-like Gene Family AT5G35390 49.688 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pvu4g1879 Pkinase 1.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1879 - - ccaj:109803310 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3114 2 46504049 46506879 Pvu4g1879 4 45763426 45767079 PCT