Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1876 ATGAAGACGCATCCGCCGCAGCCAGAGGGTGGCTCCGCCGCGCCCAATCCCACCCAAGAGAAGAGGAGCATAAACCCGGAGCTGTGGCAAGCTTGTGCAGGGCCTTTGGTGAATCTTCCTCCCTCCGCCACACACGTCATATACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCATCGCTCAAGAAAGATGTCGACTCGCAAATTCCGAACTATCCCAATCTCCCCTCCAAGTTGCTCTGTCTCCTTCACAATCTCACTTTGCATGCTGATCCCGAAACAGATGAAGTATACGCTCAGATGACTCTTCAACCAGTTCCTTCTTTCGACAAGGATGCTCTGCTGAGGTCAGATCTTGCTCTCAAGTCCACCAAGCCACAACCCGACTTCTTCTGTAAACAGCTCACCGCAAGTGACACCAGCACTCACGGAGGTTTCTCTGTGCCCCGTCGTGCCGCCGAGAAGATTTTCCCTCATCTTGATTACTCTATGCAACCCCCTGCGCAAGAACTCGTCGCCAGGGATTTGCACGACAATGTTTGGACATTCCGCCACATATACCGTGGACAACCAAAGCGTCACTTGCTTACCACTGGATGGAGTCTATTTGTCAGTGGAAAGAGGCTTTTTGCCGGAGACTCTGTTTTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAATATATCTTCGTCAGTACTATCGAGTGATAGTATGCACATTGGAATTCTTGCTGCAGCGGCTCATGCAGCCGCAAACAATAGCCCCTTCACCGTCTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCCGTGTACAGCCACCAACCATCACTTGGCATGCGTTTTCGAATGATGTTTGAAACTGAAGACTCGGGAACTAGGAGATATATGGGTACAATTACAGGTATCAGTGATCTGGATCCTGTGCGATGGAAAAATTCTCAATGGCGAAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGAGAAAAGCGTAGCAGGGTCTCTATCTGGGAAATTGAACCAGTAACTGCTCCATTTTTCCTCTGCCCACCTCCATTCTTTAGATCCAAGAGGCCAAGACAACCTGGAATGCCGGATGATGAATTATCTGATTTTGATAACATTTTCAAGCGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCTGGTCTGAGCTTAGCTCAATGGATGAACATGCAGCAAAATCCGGCACTGGCTAGCTCGTTGCAGCCAAATTTTGCACCTTCTTTATCCGGATCTATTTTGCAAAATATTCCTGGGGCTGATATATCTCGGCAGCTGGGATTTTCTGCTCCACAAATTTCTCCGTCAAACAATGTAGCCTTCAATACTCAGAGACTACTTCAGACTGCTCAACAGCTGGATCACCTTCAGAAGCTACCATCTACATCTAGCACATTGGGAACAGTCCTGCCACCACAGCAACAGTTGGGTGATATCACTCAACAATCAAGGCAAAACTTGGCAAATCAAACTATGCCACAGGGTCAAGTTCAGGCCCAACTCTTGCATCCCCAAAACATTGTCCAAACCAACAATATTCAACAGCAGCAACCATCCATTCAAAACCATCAAATGCATAGAAGCCTCTCTCAGAATCCATCACAGCAGCAGACAATTATAGGTCAGAGTCCTATCCCTGATCATCTTCAACAATTACAGATGTCTGACAATCAGATTCAGTTGCACTTGTTACAAAAGTTTCAACAACAACAACAAAAACAAACGCACTTGGCACAGCAAACAGTGTTGCAGCAGCCTACTCAACTTACTCAAATCCAGGATCAGCAGAGACAGATTTTAGATAAGACACATAACTTGTCTAGAGCAGTAACACCTGGTCAAGTTCTGGAAATTCCTCCTTTGCTTAAAAATTCACTGCCTGAGGCTAATTCTATCTCTAATCAGATCACAAAGGCTAATTTCCAGAACAATATTCAATTCCCTCAGCAGCCCAAGCTTCAACAGCAGCAACCCGGCTTGCTGTCTGAAATGTCTGGCCACATGGCACTTCTCCCTACCCATACAACTAACCAACTTTCTGCTGCCGGAAGTAGTATACTGAATGGAGCAGCTGGGGCAGGGCAATCTGTAATTACTGATGATATTCCATCTTGCTCCACCTCACCTTCTACAAATAACTGTGCCAGTGCACTTGCACCGTTGATAAATTCTCGATTGCAGAGAAACACAATAGTAGGGGATGACATGGCTCAGTCTGCTTCAACAATCTTGAGTTCAAGTGCGTTAGAAACTATGTCATCAAATGCAAACTTGTTGAAAGATTTACAGCCAAAGTGTGATGTTAAACCTTCTCTGAATATTTCTAAAAATCAGAATCAAGGGCATTTTGGCCTTCAGTCATACTTGAATGGTAGTGCTGCCCATACTGATTGTTTGGACACATCATCTTCTACAACATCAGTCTGCCTTTCTCAGAGTGACGCTCATATGCATCAGAATAATAATCCATTAGCTTATAATCCACATTCTATGTTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGGGGCAATATTCCATATGCCAACAACATGGATAGCCAAATGGGAATGCAACTGAATCCAGATTCCCTTTTAACCAAGGGCACATTGGGGTTGGGGAAGGATTTGTCTAATAATTTCTCTTCAGAAGGTCTGCTTGGTAATTATGAAAATAACAGAGATGCTCAGCAGGAGCTTTCATCTTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGGCCTTCAATTCAATTGATTCCACAATAGATGATAGTAGCTTCTTGAATAGGGGTACATGGGCTCCACCACCAGCACCGCCTCCGCCACCTCTGCCACCAACACAGTTTCAGCGGATGAGGACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACACGGTATTCAGGTTATGAGGAGCTGAAACAGGATCTAGCTCGTAGATTTGGAATAGAGGGACAGCTGGAGGATCGGCAGAGGATAGGTTGGAAGCTTGTCTATGTAGATCACGAGAGTGATGTTCTACTGGTGGGAGATGACCCTTGGGAGGAGTTTGTGAACTGTGTCCGCTGTATTAAGATACTTTCTCCTCAAGAAGTGCAACAAATGAGCTTGGATGGAGATTTTGGCAATGGAGGCCTTCCAAATCAAGCGTGTAGCAGCTCTGATGGAGGGAATACTTAG 3321 0.455 MKTHPPQPEGGSAAPNPTQEKRSINPELWQACAGPLVNLPPSATHVIYFPQGHSEQVAASLKKDVDSQIPNYPNLPSKLLCLLHNLTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSTKPQPDFFCKQLTASDTSTHGGFSVPRRAAEKIFPHLDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDELSDFDNIFKRTMPWLGDDMCMKDPQGLPGLSLAQWMNMQQNPALASSLQPNFAPSLSGSILQNIPGADISRQLGFSAPQISPSNNVAFNTQRLLQTAQQLDHLQKLPSTSSTLGTVLPPQQQLGDITQQSRQNLANQTMPQGQVQAQLLHPQNIVQTNNIQQQQPSIQNHQMHRSLSQNPSQQQTIIGQSPIPDHLQQLQMSDNQIQLHLLQKFQQQQQKQTHLAQQTVLQQPTQLTQIQDQQRQILDKTHNLSRAVTPGQVLEIPPLLKNSLPEANSISNQITKANFQNNIQFPQQPKLQQQQPGLLSEMSGHMALLPTHTTNQLSAAGSSILNGAAGAGQSVITDDIPSCSTSPSTNNCASALAPLINSRLQRNTIVGDDMAQSASTILSSSALETMSSNANLLKDLQPKCDVKPSLNISKNQNQGHFGLQSYLNGSAAHTDCLDTSSSTTSVCLSQSDAHMHQNNNPLAYNPHSMLFRDNSQDGEVQADARGNIPYANNMDSQMGMQLNPDSLLTKGTLGLGKDLSNNFSSEGLLGNYENNRDAQQELSSSMVSQTFGVPDMAFNSIDSTIDDSSFLNRGTWAPPPAPPPPPLPPTQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1876 1106 Gene3D - 129 232 IPR015300 -
Pvu4g1876 1106 CDD B3_DNA 130 222 IPR003340 GO:0003677
Pvu4g1876 1106 Gene3D - 295 366 - -
Pvu4g1876 1106 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Pvu4g1876 1106 MobiDBLite consensus disorder prediction 1 20 - -
Pvu4g1876 1106 MobiDBLite consensus disorder prediction 974 988 - -
Pvu4g1876 1106 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Pvu4g1876 1106 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 1100 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu4g1876 1106 ProSiteProfiles PB1 domain profile. 994 1078 IPR000270 GO:0005515
Pvu4g1876 1106 MobiDBLite consensus disorder prediction 967 988 - -
Pvu4g1876 1106 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu4g1876 1106 PANTHER AUXIN RESPONSE FACTOR 5 1100 - -
Pvu4g1876 1106 Pfam AUX/IAA family 994 1079 IPR033389 -
Pvu4g1876 1106 Gene3D - 989 1083 - -
Pvu4g1876 1106 SUPERFAMILY DNA-binding pseudobarrel domain 121 260 IPR015300 -
Pvu4g1876 1106 SUPERFAMILY CAD & PB1 domains 1007 1072 - -
Pvu4g1876 1106 SMART B3_2 131 233 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1876 Pvu-Chr4 45750116 45756034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1876 20 474 B3 DNA Binding Superfamily AT1G19220 72.926 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu4g1876 B3 1.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1876 - - ccaj:109803454 1875.14