Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1839 ATGGAGAATAGCTGCTTTCTAGCTTTTCTCATCCTCATTCTACATTCAATTACAACAAAAGCTGCCTTCAGTGTTGGTGGTGGTGTTGGTGTTGGAGTTGGTGTTGGTGTAGGTGTTGGTGTTGGTGTTGGCAACGGAAATGGCGGTGGCAATGGTGGAACGGTTTGGGTCGGAGGAGGGATTAACAGCCCAGAGCCCCCTGGATCTTCAGTGCCAAAGCCTGAAGGAGCTTACACAGCTCTGCAAGCTTGGAAATCTGCAATCACTGAGGACCCTCTGAACATTTTAGAAAGTTGGGTTGGTCCAAATGTGTGTTCTTACAAAGGAGTCTTCTGTGCAAATCCTCAAGATGAAATGGTTGCATCAGCATTCTCAGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTGCAAGGAACTCTTGTCAAAGAGCTCTCTCTACTCAGTGATTTGTCTCTTCTCCACCTCAACACTAACAGATTCACGGGCACTGTTCCTGATACATTCAGAGACCTGGTGTTTCTGGAAGAGTTGGACCTCAGCAACAACCAACTCTCAGGTCCTTTCCCTGCTGCTACGCTGTACATGCCAGGCCTCATCTACTTAGACCTAAGATTCAACTACTTCTCTGGGGCCCTCCCCGAGGAACTTTTCAGCAAGAATCTGGATGCAATATTTCTCAATAACAACCAATTTGAAGGTGAAATCCCCCAAAACTTGGGTAGTTCCCCAGCCTCGGTGATAAACCTGGCCAACAACAAGTTGAGTGGAAACATCCCAGCAAGTTTGGGCTTCATGGGTTCTAAAATAAAGGAGATTCTATTCCTCAATAACCAGTTAACTGGTTGCATCCCTGAGGGAGTGGGGCTATTCACAGAGATGCAAGTTCTGGATGTGAGCTTCAACTCACTTATGGGTCATTTGCCAGACACACTGTCATGCTTGCAAGACATAGAAGTTCTCAACTTGGCTCATAACAAGCTCTCTGGGGAGTTATCAGACGTACTCTGCTCTTTGAGAAGCCTTGCAAATCTAACTGTTGCTTACAATTTCTTTTCGGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCCCTAAACTGCATTCCTGGAAGGGACATGCAGAGACCTCAACCTGAGTGCTCTATGATCCCAGGGGGTAGCCTTAGTTGTCTCAGAATCCCCACTCCAAGGTCCCTTGTTTGTGGTTCAATGGCTGTAAGTAAGTCTAAGCACATTGATCCCATTTCCCCATCTCCTTGA 1284 0.4642 MENSCFLAFLILILHSITTKAAFSVGGGVGVGVGVGVGVGVGVGNGNGGGNGGTVWVGGGINSPEPPGSSVPKPEGAYTALQAWKSAITEDPLNILESWVGPNVCSYKGVFCANPQDEMVASAFSVVAGIDLNHANLQGTLVKELSLLSDLSLLHLNTNRFTGTVPDTFRDLVFLEELDLSNNQLSGPFPAATLYMPGLIYLDLRFNYFSGALPEELFSKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGNIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDVLCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDMQRPQPECSMIPGGSLSCLRIPTPRSLVCGSMAVSKSKHIDPISPSP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1839 427 Pfam Leucine rich repeat 151 208 IPR001611 GO:0005515
Pvu4g1839 427 Gene3D Ribonuclease Inhibitor 244 365 IPR032675 -
Pvu4g1839 427 Gene3D Ribonuclease Inhibitor 77 243 IPR032675 -
Pvu4g1839 427 Pfam Leucine rich repeat N-terminal domain 78 112 IPR013210 -
Pvu4g1839 427 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 427 - -
Pvu4g1839 427 SUPERFAMILY L domain-like 77 361 - -
Pvu4g1839 427 PRINTS Leucine-rich repeat signature 175 188 - -
Pvu4g1839 427 PRINTS Leucine-rich repeat signature 315 328 - -
Pvu4g1839 427 PANTHER LRR/EXTENSIN 1 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1839 Pvu-Chr4 45467192 45468819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1839 72 400 Leucine-rich Repeat extension Gene Families AT3G24480 49.851 6.74e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1839 - - gsj:114407518 728.398