Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1838 ATGAGTAAGATGAGCAACTTGAGTTCTGTGAGCAGTTCTGATCTCATAGATGCAAAGCTTGAAGAGCATCAATTGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTTGGCCTGCCAGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTGATAGAACATCTTGAAGCCAAAGTGGAGGCCAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGAATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGATTGAGCAGGCACTTCTTCCATAGACCTTCAAAGGCTTACACAACTGGGACAAGAAAGAGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACAAGGTGGCACAAGACAGGTAAGACCAGGCCAGTGATGGTGAATGGAAAGCAAAAGGGTTGCAAGAAAATTCTTGTGCTCTACACCAACTTTGGGAAGAACAGAAAGCCAGAGAAAACCAACTGGGTGATGCACCAATACCATTTGGGGCAGCATGAAGAAGAGAAAGAGGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACGCAGCCAAGACAGTGCAACTGGTCTGATAGAAGTGCAACAACTGAAGGAAGTGGAGAACCTAACAACAACAGTAGCAGAAGGGACAGTGGAAGTGGAAGTTCTTCTTCCAAAGAAATTGTTACTCACAGAGATGAGATGTCTGCTCCAATCACTACTTTCACTCATCACCCTTTCGACATCCACCATCTAAAACCCGATCACTTTAGCTTCATCCCTTTCAGGAAAACCTTTGATGAGGTTGGAATGGGAGAGGCTTCCACAGCAAGGGAAGTAGTGCAAGCATCAGGTTCATGTGAAGATGTGCATGAACGGCAGAGAGCACAACATGTAGCTCATCATCATCAACAACAGCAGCAACATCAGCAGCAGCAGCATGCTCATCATCAGATTTCAAACTCAGCTTTTCATATCAGTAGGCCGTCACATCCCATCTCCACCATTATCTCTCCACCTCCCCTCCACCACACTTCCATCATTCTTGATGACAACTCTTACCACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTTCAGCAACAACAGCAACAGCATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGAAATCAAAGAGGAATCATCCATGACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTACTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1347 0.4536 MSKMSNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTEGSGEPNNNSSRRDSGSGSSSSKEIVTHRDEMSAPITTFTHHPFDIHHLKPDHFSFIPFRKTFDEVGMGEASTAREVVQASGSCEDVHERQRAQHVAHHHQQQQQHQQQQHAHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHHVSRIMLQNENFQQQQQQHHKLGGRSASGLEELIMGCTSTEIKEESSMTNPQEAEWLKYSSYWPDPDNPDHHG* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1838 448 MobiDBLite consensus disorder prediction 323 340 - -
Pvu4g1838 448 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Pvu4g1838 448 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 431 - -
Pvu4g1838 448 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Pvu4g1838 448 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Pvu4g1838 448 MobiDBLite consensus disorder prediction 214 250 - -
Pvu4g1838 448 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Pvu4g1838 448 MobiDBLite consensus disorder prediction 214 246 - -
Pvu4g1838 448 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 431 IPR044799 GO:0003700
Pvu4g1838 448 MobiDBLite consensus disorder prediction 317 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1838 Pvu-Chr4 45454789 45460592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1838 11 445 NAC Transcription Factor Family AT5G56620 54.066 1.31e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu4g1838 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1838 - - gmx:100795246 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3158 2 46920250 46926401 Pvu4g1838 4 45454789 45460592 PCT