Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1834 ATGATGCTCGGAGAGCACCGTCGATCAAATCCAACGGTCCACGTTCCACCGTGGCCAGCCCACGATGATCCCACGGCGGAGATGTACTCCGCGTTTTTAACTAACGACGTCAATGCTGCTGAGTACTCTCCGTACTATCTTCAAGAAGCGTTAACGGCGCTGCAGCGCTACCTTCCGGCGAACGAAACGGACGCTGACTCCGACTCGGAGGCTCAGCCCGACGCGCCGGTGGACGCGTACTCCTGCGACCATTTTCGCATGTACGAGTTCAAAATCCGTCGATGCGCGCGTGGCAGGTCGCACGACTGGACCGAGTGTCCGTACGCGCATCCCGGAGAGAAGGCGCGCCGCCGCGACCCGCGCAAGTTCCACTACTCCGGCGCGGCGTGCCCTGAGTTCCGCAAGGGGAGCTGCAAGAAAGGTGACACGTGCGAGTTCGCGCACGGTGTGTTCGAGTGCTGGCTGCACCCCGCGCGCTACCGCACGCAGCCTTGCAAGGACGGCACCAGTTGCCGCCGTCGCGTTTGCTTCTTTGCGCACACGCCGGAGCAGCTGCGCCTCGTGCCGATGCAGAGTCCTCGAAGCTCGGGGGAGTCCTACGACGGTTCTCCGATGAGACAAATTCTACAGTCCACGGCGTTCATGTCGTCTCCGGCGGCCTCTCTTTCTCCGCCGGAGTCTCCCCCTCTGTCGCCATCCATGAACGAGATGGTGGCTTCTCTGCGAAATCTGCAGCTGGGTAAGATGAAATCGATGCCTCATAACCGAAACGTTTCGGTTGGGTCTCCCGGTTACGGGTCACCCAGAGGCTCAGTGCTTCGACCCGGGTTTTGTAGTCTTCCGACAACTCCAACACAGCAACCGGCGAGGTCTGGGGTGAACTATTTGGATATTTGGGAGCAGAGTGTTGAGGAGGAGCCGGTTATGGAGAGGGTTGAGTCTGGGAGGGGCATAAGGGCGAAGATGTTTGAGAAGCTAAGCAAAGAAAACTCTCTGGAAGGGTCGGGTTCGGGTCATGGAAGTGGGGCTCCGGATGTTGAATGGGTTTCGGAGCTTGTGAAGTGA 1065 0.5944 MMLGEHRRSNPTVHVPPWPAHDDPTAEMYSAFLTNDVNAAEYSPYYLQEALTALQRYLPANETDADSDSEAQPDAPVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPEFRKGSCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPMQSPRSSGESYDGSPMRQILQSTAFMSSPAASLSPPESPPLSPSMNEMVASLRNLQLGKMKSMPHNRNVSVGSPGYGSPRGSVLRPGFCSLPTTPTQQPARSGVNYLDIWEQSVEEEPVMERVESGRGIRAKMFEKLSKENSLEGSGSGHGSGAPDVEWVSELVK* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1834 354 Gene3D - 119 195 - -
Pvu4g1834 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Pvu4g1834 354 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 354 - -
Pvu4g1834 354 PANTHER UNKEMPT FAMILY MEMBER 7 354 IPR045234 -
Pvu4g1834 354 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Pvu4g1834 354 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Pvu4g1834 354 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Pvu4g1834 354 MobiDBLite consensus disorder prediction 328 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1834 Pvu-Chr4 45402786 45404559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1834 73 258 C2H2 Transcription Factor Family AT5G12850 50.725 1.49e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu4g1834 zf-CCCH 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1834 - - gmx:100778184 650.588