Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1833 ATGGGAAGGGCTCCATGCTGTGACAAATCCCTCGTCAAAAGAGGGCCATGGTCTCCCGATGAAGATGTCACCCTCAAAAACTTCCTTGAGAAACATGGCACAGGTGGTAATTGGATTGCTCTCCCCAAGAAAGCAGGGCTGAAGCGTTGTGGAAAGAGCTGTCGTCTAAGATGGCTGAACTATCTGAGGCCTCATATTAAGCTTGGAGGTTTCACTGAAGAGGAAGACAAAATCATCTGTACCCTTTATGGCACAATAGGAAGCAGGTGGTCCCTTATAGCAGCTCAACTCCCAGGGAGAACAGACAATGATGTCAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTCTTGGCAGAAAACACTGTTGCCACAAGCTACAACAATGGCACTCTCAGCAATACTAGTTCCTCTCACCAATTCTCATGTTTTGCTACTCAACCTCAAGTTGAAGCCTCTCTCTTGAATCAGAAACAGAACTCAGCTTGGTTTGACCCCTACAATACTTTTGATCTGGAACAAACACCAATTTCAGTTCCTCTTCCAATGCCTCAGGAATTGGAAGCATTTGATACTGGGGGGAGCAGTTATAGTGCACCACCCTCCAAGGAAGTTTCAATGCCAGTTTTGAATGCAGCTTCATTAGCACAGCAGAACAAACATACAGAATGGTTTGGCTACGACTATGCAGGTGAAGATGATCCAAATTTACTTGAATTTGTGCTAGACGATCTGCTGATTAATCATGGGTTTGAATCTCCATCATGTGTGGCTAACCAAGACTCATTCTACTCATCATCAAACACTTGA 810 0.4407 MGRAPCCDKSLVKRGPWSPDEDVTLKNFLEKHGTGGNWIALPKKAGLKRCGKSCRLRWLNYLRPHIKLGGFTEEEDKIICTLYGTIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAENTVATSYNNGTLSNTSSSHQFSCFATQPQVEASLLNQKQNSAWFDPYNTFDLEQTPISVPLPMPQELEAFDTGGSSYSAPPSKEVSMPVLNAASLAQQNKHTEWFGYDYAGEDDPNLLEFVLDDLLINHGFESPSCVANQDSFYSSSNT* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1833 269 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pvu4g1833 269 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pvu4g1833 269 CDD SANT 71 113 IPR001005 -
Pvu4g1833 269 PANTHER OS09G0431300 PROTEIN 1 185 - -
Pvu4g1833 269 PANTHER OS09G0431300 PROTEIN 1 185 - -
Pvu4g1833 269 SMART sant 67 115 IPR001005 -
Pvu4g1833 269 SMART sant 13 64 IPR001005 -
Pvu4g1833 269 Gene3D - 70 140 - -
Pvu4g1833 269 CDD SANT 16 62 IPR001005 -
Pvu4g1833 269 Gene3D - 7 68 - -
Pvu4g1833 269 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Pvu4g1833 269 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pvu4g1833 269 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pvu4g1833 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pvu4g1833 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1833 Pvu-Chr4 45394112 45395393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1833 1 120 MYB Transcription Factor Family AT5G57620 78.333 3.11e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g1833 Myb_DNA-binding 7.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1833 K09422 - gmx:778160 367.081