Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1810 ATGGGCAGAAAATGCTCACATTGTGGAAACAGAGGTCATAACTCCAGAACCTGTTCATCTTTGAGAGCAACTTTTGTAGGAGTTCGTCTCTTTGGGGTTCAACTACACATATCAAACTCTTCTTCTCTTACCATGAAAAAAAGCTTCAGCATGGATTCCTTGCCCTTATTATCCTCTCCATCTTCCTCCTTTTCTTCATCTGTTGGGTATCTATCAGATTCAGATGGCCTCATTGTTCCACCACAAGACAGGAAGAAAGGAGTGCCATGGACAGAAGAAGAGCACAGAACATTCCTTGTTGGACTCGAGAAGCTGGGAAAAGGTGATTGGAGGGGTATCTCCAGAAACTATGTGACTACAAGAACCCCAACACAAGTTGCTAGCCATGCTCAGAAGTACTTTATTCGTCTTGCAACCTTGAACAAGAAAAAGAGACGTTCAAGTCTTTTTGACTTGGTTGGAGGCAGCTCTAACTGTAAGTCAGGTGATTTAGTTTCTTCTGCTAAATCCAAAGGTGAAATTGAGAACGATGTCACCTTGTCACTTCTTCAATTTCAAGAAACCAAGAAGACAGATGAGCAGAGAGAAGATGATAATTATTGTGAAGCTGAAGCAGGTGCAGATGATGAAGGTGTTATGTGGCTTCATCCTCAGATGAAATCTTCAAATAATATTGCAGCAATTCCTGATCTGGAACTCACTCTTTCAGTCTCCAAGGGCAAGGTTAAGACCATGGAACAAACTAAATCAACCCCTGCTTCCTTCCTTCTTGGCCCAATTAGCGTCACTTAA 792 0.4205 MGRKCSHCGNRGHNSRTCSSLRATFVGVRLFGVQLHISNSSSLTMKKSFSMDSLPLLSSPSSSFSSSVGYLSDSDGLIVPPQDRKKGVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDLVGGSSNCKSGDLVSSAKSKGEIENDVTLSLLQFQETKKTDEQREDDNYCEAEAGADDEGVMWLHPQMKSSNNIAAIPDLELTLSVSKGKVKTMEQTKSTPASFLLGPISVT* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1810 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 138 IPR017930 -
Pvu4g1810 263 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 85 136 IPR006447 GO:0003677
Pvu4g1810 263 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 261 - -
Pvu4g1810 263 SUPERFAMILY Homeodomain-like 84 138 IPR009057 -
Pvu4g1810 263 ProSiteProfiles Myb-like domain profile. 82 134 IPR001005 -
Pvu4g1810 263 SMART sant 86 136 IPR001005 -
Pvu4g1810 263 ProSiteProfiles SANT domain profile. 90 138 IPR017884 -
Pvu4g1810 263 PANTHER TRANSCRIPTION FACTOR KUA1 1 261 - -
Pvu4g1810 263 CDD SANT 89 134 IPR001005 -
Pvu4g1810 263 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Pvu4g1810 263 Pfam Myb-like DNA-binding domain 89 134 IPR001005 -
Pvu4g1810 263 Gene3D - 88 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1810 Pvu-Chr4 45277672 45279263 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu4g1810 Myb_DNA-binding 1.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1810 - - pvu:PHAVU_004G171200g 486.878