Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1795 ATGGTCGACCCAGCACCATCCTCGGAATCAGACACAACAAACACCATCACTTCCACTTCTTCACCATCATCCTCGTCGTCCACTTCCAAGAAACGAGGTAGAAACAACGACAACAATGGCAATAGTAACGACAACAAGCATTCTGTGTACAGAGGAGTCAGAATGCGCACGTGGGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAGAACCGCATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTCACCATAAAGGGCTCCTCGGCCATCCTGAACTTCCCCGAACTCGCCGCCTCGCTGCCGCGCCCCGCCTCCAACTCCCCCCGCGACGTTCAGGCCGCCGCCGCCAAGGCCGCCTCCATGGAGGCGCCTCCCCGGAGCCCCCTCTCGCCGGCCGCCGCGCCGGAGGACGACCTCGGCGAGATTGTGGAGCTGCCGCCGCTGGGGTCCAGCTTCGACTCGCCCGACCCGAATACGGAGTTCGTGTTCCTCGACCCGGATGAAGGGTGGCCCTATCCTCACCCGTGGTGTCACGGCATTTATGACGGTGGGTACTTCATCGGTGACATGAACATGGTTTCAATGCAACAAGACTCAGAAAGCATGGTTCTTTCCTTGTGGCCTTGA 663 0.6109 MVDPAPSSESDTTNTITSTSSPSSSSSTSKKRGRNNDNNGNSNDNKHSVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAASLPRPASNSPRDVQAAAAKAASMEAPPRSPLSPAAAPEDDLGEIVELPPLGSSFDSPDPNTEFVFLDPDEGWPYPHPWCHGIYDGGYFIGDMNMVSMQQDSESMVLSLWP* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1795 220 MobiDBLite consensus disorder prediction 1 51 - -
Pvu4g1795 220 SUPERFAMILY DNA-binding domain 48 107 IPR016177 GO:0003677
Pvu4g1795 220 MobiDBLite consensus disorder prediction 113 147 - -
Pvu4g1795 220 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Pvu4g1795 220 MobiDBLite consensus disorder prediction 1 48 - -
Pvu4g1795 220 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Pvu4g1795 220 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Pvu4g1795 220 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Pvu4g1795 220 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 209 - -
Pvu4g1795 220 CDD AP2 48 108 IPR001471 GO:0003700|GO:0006355
Pvu4g1795 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 209 - -
Pvu4g1795 220 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Pvu4g1795 220 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1795 Pvu-Chr4 45126736 45127899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1795 5 188 AP2-EREBP Transcription Factor Family AT5G11590 51.691 1.82e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu4g1795 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1795 K09286 - gmx:100804801 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1795 4 45126736 45127899 Pvu4g1795 4 45126736 45127899 ECH
Pvu2g3190 2 47177131 47178333 Pvu4g1795 4 45126736 45127899 PCT