Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1792 ATGGCAGAGGGGTCATCAAATGATGCAGGGAAGGGAAAAGGCATTGCCCAAGAGAGAGAATCTTGGAGAGAGATTATGCAGAAGGATGAGATGCAGGTGGAGTTCGTCTTCACCATTGGGCATGTGAAGGACTTGGAGTTGAGCATGCCATATAGGGCACAATTGACCAACGACAAGTGGAACCTGTTCCTGCGTGTGCCCTACTTGGAAGAAATCCTCTTGCAGTTCTTGAAAGAGGAAGAAGAACAAGAGCTCAAAGAGGGTCTCCCAGTGACCGTCTATGACAAAGGGGGGCACGAGTTCCCAATGATGCTCAAGAAATTCGACAAAGATTCCACCTCTTACTATGTGCTCAATCGAGGGTGGTTCAATTTCTGCGACCAGAAGCTCTTGCAGGAAAACGATGTTGTTGCACTGCGAACTTTTCGCCATGCAATAACCGACAAGCTATCCTTCCTTGTTACTTTCATAAAATTGAGGTAA 483 0.4679 MAEGSSNDAGKGKGIAQERESWREIMQKDEMQVEFVFTIGHVKDLELSMPYRAQLTNDKWNLFLRVPYLEEILLQFLKEEEEQELKEGLPVTVYDKGGHEFPMMLKKFDKDSTSYYVLNRGWFNFCDQKLLQENDVVALRTFRHAITDKLSFLVTFIKLR* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1792 160 Gene3D - 50 156 IPR015300 -
Pvu4g1792 160 ProSiteProfiles B3 DNA-binding domain profile. 91 160 IPR003340 GO:0003677
Pvu4g1792 160 SUPERFAMILY DNA-binding pseudobarrel domain 74 147 IPR015300 -
Pvu4g1792 160 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 50 155 IPR005508 GO:0003677
Pvu4g1792 160 PANTHER B3 DOMAIN PLANT PROTEIN 50 155 - -
Pvu4g1792 160 Pfam B3 DNA binding domain 75 141 IPR003340 GO:0003677
Pvu4g1792 160 CDD B3_DNA 88 158 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1792 Pvu-Chr4 45105444 45105926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1792 24 159 B3 DNA Binding Superfamily AT4G03170 31.690 8.67e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu4g1792 B3 1.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1792 - K25080 pvu:PHAVU_004G169500g 300.827