Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1790 ATGGGTTGCATTTACTCGCGAGTCTGCATAGGCGACAACTGCAGAGGCTCCAGCATCAACGGCGACCCCATTAACAGAACCACCGACGTAGGTGAAGTCGCCAATTTCTCACACACCTCTTCCGACGCCGAAGAAGGTGAAATCAGAGACCAGCTCAACCAATTGAGCATCACGCGAGACTCCGAAACCGGAATCCGAAGACTCTCTAGGGTTTCGGCGCAGTTTCTGCCGCCGGATGGTTCGCGAATCGTGAAAATACCTTCTGGAAACTTCGAATTGCGATACTCGTTCTTGTCTCAGCGAGGGTACTACCCAGATGCACTCGATAAAGCGAACCAGGACAGTTTCTGCATCCACACGCCTTTTGGTACGAGCCCTAACGACCACTTCTTTGGAGTGTTCGACGGGCATGGTGAGTTTGGAGCTCAGTGCTCGCAGTTCGCGAAGCGGAAAGTGTGTGAGAATTTGCTCAGAAACTCCAAATTCCGTGGTGATCCTGTTGAGGCTTGTCATGCGGCGTTTTTGGCGACGAATTCGCAGCTTCATGCTGATGTTTTGGATGACAGCATGAGCGGGACGACGGCGATCACGGTGCTGGTGAGGGGGAGGACGATATATGTGGCGAATTCCGGCGATTCGAGGGCGGTGATTGCGGAGAGGAGAGGGAAGGAAATTGTGGCCGTTGATTTGTCGATTGATCAGACGCCGTTTAGGAGTGATGAGCTTGAGAGAGTGAAGCTATGTGGGGCCAGGGTTCTTACTTTGGATCAGATTGAGGGGTTGAAGAACCCTGATGTGCAGTGTTGGGGCACTGAGGAGGGTGATGATGGTGACCCTCCAAGGTTGTGGGTGCCCAATGGGATGTACCCGGGGACGGCTTTCACCAGGAGTATTGGTGATTCTATTGCGGAGACTATTGGGGTAGTGGCGAATCCTGAGATTGTTGTGTTTGAGCTCACGCAGGATCACCCTTTCTTTGTGCTTGCTAGTGATGGGGTGTTTGAGTTTCTCAGTAGCCAGAGTGTGGTTGAAATGGTTGCAAAATTCAAAGATCCTCGTGATGCTTGCGCTGCAATTGTGGCAGAATCTTATAGACTCTGGCTGCAATATGAAACTCGTACAGATGACATCACAGTCATCATTGTACATGTAAATGGGCTAACTGAATCTACTGTTGGTCAGAGTCAGTCGGCTTGTTATGGTGATGTTTTGCGAAAACCTGTGCCACAAGTTGTAGAGGTGACAGGTTCAGAATCCCCTTCCACCTTTGGCTGGAGTGCTAGAAACCATCGTGTAAGACATGATTTGTCAAGGGCACGCCTCCGAGCACTTGAAAATTCCCTGGAAAATGGGCAAGTTTGGGTTCCTCCCCCTTCAGCCCATAGAAAGACATGGGAAGAAGAAGCACACATAGAGCAGGCATTGCACGATCATTTCCTCTTCCGAAAACTTACCGATTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTGGAGGTCGACCCTGGGGATATTATAGTCAAACAGGGTGGTGAAGGTGACTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAGGTCTTGGCAACTCAGGAAGAAAAAGAAGGGGACGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTCTCTTGTTTTGGAGAACTTGCTCTAATGTACAATAAACCACTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACACTTTGGGCTTTAAAACGGGAAGATTTTCGAGGGATTTTAGTGTCAGAATTCTCTAACTTATCATCATTGAAGTTGCTTCGGTCTGTAGATCTCCTCTCGAGGTTATCAATTTTACAACTCAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCCTTCTCAAATGGGCAGACAATAATTGACAATAATGAAATCCTTGCATTGTACATTATACAGAAGGGATGCGTAAAAATCACTTTTGATTCTGATTTATTGACGAGTCCAAATGCCTACAGCCTCAAGCCTGACATCCAAAACGAGGAGGATGATGTTCAGAGCATAACAGAACTATCAGTAGAGAAGCCTGAGGGAAGCTATTTTGGTGAATGGGTCCTTTATGGTGAACGTATTGGTTCCATAAGTGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTACTAACAAAGGACAAATTTGAATCTGTTATTGGCTCCTTACAAAAGATTTCTCAGGAAGATCACAAGTCAAGGGATAATTCCAAGGAGTTGACTAGAAGAAATTATGATTTTTCATCCCTTGATAAAGTCCAGCTCTCAGATTTGGAGTGGAGAAAGACGCTATATTCCACTGACTGTTCCGAAATAGGGGTTGCAAATTTAAAAGAATCAGAGAATTTGCTTACTTTGAAGAGATTTTCTAAGCCAAAGGTGAAAAGGCTTGGAAAGGAATCACAAGTCTTGAAAGAGAAAGATTTGATTAAGGGTTTGGGCTCTTCAACTAGTATACCACAGGTTTTATGCACTTGTGCTGATCGCATGTATGCTGGAATACTGCTAAATACTCGCCTTGCTTGCCCTTTGTCTTCCATACTTTCAAGTCCTTTTAGTGAATCAGCTGCACAGTTTTGTGCTGCATCTGTTGTTACTGCCTTAGAAGACTTGCACAAGAATGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTGGAGCAAACAGGACAGATACAGCTGGTGGACTTCAGATTTGGAAAACAGCTTTCTGGTGAGAGAACATTCACAATTTGTGGGATGGCAGATTCTCTGGCTCCAGAGATTGTTTTGGGAAAAGGGCATGGTTTCCCTGCCGACTGGTGGGCATTGGGAGTTTTAATATATTTTATGTTACGTGGTGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGATACAGTGGCCAAAATTGCAAAAAGGAAGCTACATCTTCCCGAGAGTTTCAGCTCTGAAACAGTTGATCTCATCTCCAAGCTACTTGAAGTGGAAGAAAACAATAGACTTGGAAGCCAAGGTCCTGATTCTGTCAAGAGTCACCCATGGTTTAATGGGATTGAATGGGAAGGGATTAGAAACCACACTTTTCCTGTTCCTCAGGAAATTATTTCTCGTATAACACAGTACTTGGAAGTTCATTCTGAGGACTGTGGTGCTGGCTATCCGGGCTCGCCATTACAGGAGGTAGAAGAACTTAATGTGCCTGAATGGCTTGAGGACTGGTAG 3240 0.4556 MGCIYSRVCIGDNCRGSSINGDPINRTTDVGEVANFSHTSSDAEEGEIRDQLNQLSITRDSETGIRRLSRVSAQFLPPDGSRIVKIPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSPNDHFFGVFDGHGEFGAQCSQFAKRKVCENLLRNSKFRGDPVEACHAAFLATNSQLHADVLDDSMSGTTAITVLVRGRTIYVANSGDSRAVIAERRGKEIVAVDLSIDQTPFRSDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQSVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHVNGLTESTVGQSQSACYGDVLRKPVPQVVEVTGSESPSTFGWSARNHRVRHDLSRARLRALENSLENGQVWVPPPSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVDPGDIIVKQGGEGDCFYVVGSGEFEVLATQEEKEGDVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILVSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSNGQTIIDNNEILALYIIQKGCVKITFDSDLLTSPNAYSLKPDIQNEEDDVQSITELSVEKPEGSYFGEWVLYGERIGSISAVAVGDVVCALLTKDKFESVIGSLQKISQEDHKSRDNSKELTRRNYDFSSLDKVQLSDLEWRKTLYSTDCSEIGVANLKESENLLTLKRFSKPKVKRLGKESQVLKEKDLIKGLGSSTSIPQVLCTCADRMYAGILLNTRLACPLSSILSSPFSESAAQFCAASVVTALEDLHKNGVLYRGVSPDVLMLEQTGQIQLVDFRFGKQLSGERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPESFSSETVDLISKLLEVEENNRLGSQGPDSVKSHPWFNGIEWEGIRNHTFPVPQEIISRITQYLEVHSEDCGAGYPGSPLQEVEELNVPEWLEDW* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1790 1079 SMART cnmp_10 606 744 IPR000595 -
Pvu4g1790 1079 SMART cnmp_10 480 603 IPR000595 -
Pvu4g1790 1079 Gene3D Phosphorylase Kinase; domain 1 765 851 - -
Pvu4g1790 1079 Gene3D - 90 385 IPR036457 -
Pvu4g1790 1079 CDD CAP_ED 606 730 IPR000595 -
Pvu4g1790 1079 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Pvu4g1790 1079 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 37 1079 - -
Pvu4g1790 1079 CDD CAP_ED 480 588 IPR000595 -
Pvu4g1790 1079 SUPERFAMILY cAMP-binding domain-like 461 589 IPR018490 -
Pvu4g1790 1079 ProSiteProfiles cAMP/cGMP binding motif profile. 480 588 IPR000595 -
Pvu4g1790 1079 SMART serkin_6 775 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1790 1079 Gene3D Jelly Rolls 593 753 IPR014710 -
Pvu4g1790 1079 SUPERFAMILY cAMP-binding domain-like 597 737 IPR018490 -
Pvu4g1790 1079 Gene3D Jelly Rolls 451 588 IPR014710 -
Pvu4g1790 1079 PRINTS cAMP-dependent protein kinase signature 501 515 - -
Pvu4g1790 1079 PRINTS cAMP-dependent protein kinase signature 516 530 - -
Pvu4g1790 1079 PRINTS cAMP-dependent protein kinase signature 551 560 - -
Pvu4g1790 1079 PRINTS cAMP-dependent protein kinase signature 725 737 - -
Pvu4g1790 1079 Pfam Protein kinase domain 787 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1790 1079 ProSiteProfiles Protein kinase domain profile. 767 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1790 1079 ProSiteProfiles PPM-type phosphatase domain profile. 94 384 IPR001932 -
Pvu4g1790 1079 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 37 1079 - -
Pvu4g1790 1079 SUPERFAMILY Protein kinase-like (PK-like) 753 1047 IPR011009 -
Pvu4g1790 1079 Pfam Cyclic nucleotide-binding domain 499 588 IPR000595 -
Pvu4g1790 1079 Gene3D Transferase(Phosphotransferase) domain 1 852 1037 - -
Pvu4g1790 1079 SUPERFAMILY PP2C-like 82 386 IPR036457 -
Pvu4g1790 1079 CDD PP2Cc 110 384 IPR001932 -
Pvu4g1790 1079 Pfam Protein phosphatase 2C 124 363 IPR001932 -
Pvu4g1790 1079 SMART PP2C_4 90 382 IPR001932 -
Pvu4g1790 1079 ProSiteProfiles cAMP/cGMP binding motif profile. 606 746 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1790 Pvu-Chr4 45070889 45080193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1790 1 1079 PP2C-type Phosphatase Gene Family AT2G20050 67.847 0.0 1501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Pvu4g1790 Pkinase 4.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1790 - - gmx:100799821 1976.44