Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1789 ATGAATCAGCTTGGTGTTATCCTTTTTGTTCTTTCAATCTTGTTCCTACAAGTTAGAGCACAGAGTACTGCACCTTCAGGAGATGCTGTGTCCAATTTCCAGCCAAGCCTTGCTGTTGTCATAGGAATCCTTGGTGTCATGTTTCTACTGACATTCTTTCTTCTCATGTATGCAAAATTCTGTCAACACCGCGGCTCTTCAGCTTCTCTTGGGAACCAAGAAAATCTACCAACTTTTGTGAGATCAAGGTCTAGATTTTCAGGAATTGACAAGACTGTCATAGAATCACTCCCCTTCTTTAGATTCTCTTCACTCAAAGGGTCAAAGGAAGGGCTGGAGTGTGCAGTGTGCTTATCAAAGTTTGAAGATGTTGAAGTTCTCAGACTTCTACCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAGGCACTCTAGCTGTCCTATTTGCAGGCACAAGGTCAACCCTGAGGACCACACTACCTTCACATATTCAAACAGTTTAAGGAGGCTAGCAAACCAATCAGGTCTAGGTGAAGAATCTAACTTAGACATCTTTGTCCAGAGAGAAGAAGAGCATCATGGTTCATCAAGATTCAGTGTTGGAAGCAGCTTTCGGAAAATGGGAAAGGGTGTCAAGGAAGAAGAATTGCTCATCCAAAAAGGGGCAGAAGATAGTGATGGTAACCAGAAGGGGTATCATAAACACAACCACATGATTACTATATCTGATGTTGTGTTCAAGCACAGGTGGAGCAACGTGAGTTCTTCAGACCTTATGTTTTTGAATTCAGAGATGCTGAATGCTACATCAAGCAACAGATTCAGCAACTTCGAATCAAATGCAGACTTGATGTCAACCCCCAGAGAGGTGGTAGAAAATGAGCAAATTAAGAACATCAAGGAGGAGATGGAGAGGAAAATTTCCTTCGAGAGCAAAGTTAGTGCACTAAACAACATCAAATCAGTTTCAGAAAAGGATCCTCCTTTTACATCAGATTCTGCAGGAAACTCAAGTCATGCACCAAAGTATGTGAACCCTGGTGAGAAAAGGTCAATATCAGAAATCACTGGTGTCTCTAGATTTGGAGACTTAGGCATGAAAATGAGGGTCTTCAAGGACTCTTCTTCTGTTCAAAACAACCTTAAAGAGGAAAGAATGAGGCAGATTTGGTTTCCAATAGCTAAAAGAACAGCTCAATGGTTTGTGAATAGAGAAACAAGGTCTCAGCAATCTCTGGATAAACAACTACCATTAGATCTATAA 1281 0.4106 MNQLGVILFVLSILFLQVRAQSTAPSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQHRGSSASLGNQENLPTFVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVNPEDHTTFTYSNSLRRLANQSGLGEESNLDIFVQREEEHHGSSRFSVGSSFRKMGKGVKEEELLIQKGAEDSDGNQKGYHKHNHMITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSNRFSNFESNADLMSTPREVVENEQIKNIKEEMERKISFESKVSALNNIKSVSEKDPPFTSDSAGNSSHAPKYVNPGEKRSISEITGVSRFGDLGMKMRVFKDSSSVQNNLKEERMRQIWFPIAKRTAQWFVNRETRSQQSLDKQLPLDL* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1789 426 Pfam Ring finger domain 113 156 IPR001841 -
Pvu4g1789 426 SMART ring_2 114 155 IPR001841 -
Pvu4g1789 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 165 IPR013083 -
Pvu4g1789 426 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Pvu4g1789 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 418 - -
Pvu4g1789 426 SUPERFAMILY RING/U-box 93 162 - -
Pvu4g1789 426 MobiDBLite consensus disorder prediction 328 346 - -
Pvu4g1789 426 CDD RING-H2_PA-TM-RING 113 156 - -
Pvu4g1789 426 MobiDBLite consensus disorder prediction 328 354 - -
Pvu4g1789 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1789 Pvu-Chr4 45066688 45068241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1789 6 415 C3H Transcription Factor Family AT4G28890 47.836 6.41e-112 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1789 K10664 - gmx:100803207 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1789 4 45066688 45068241 Pvu4g1789 4 45066688 45068241 ECH