Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1759 ATGTCTGTGCCACTGGAACAAGGCTATGTAGGCTTATCAGAGGTTCCTGCAATGGAAGGTTCTGACAAGTTTTCCCAGAGGACTAGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTACCAGGTTCCGAGTCACCTGAGAGAGATGGGGGTGTGGAAGAAAGGAATGTGCACCCTTTAGGCATGGTGAAGAATTTGGTGTCTGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTTCTGGGAAGTGGCTTCTCTCTGGGAATGGTGGATCTGAGGTGGGGTTGGGAAAAGATTGTGGCTTGTTCTCACCAAGGGGTGTTGGTGCTAGTGCTGGCAAGGCTGAGTCTACCAACCAACAAACATCTGTTGTTAAAGATAAAGTTCCTCTGCCTCCAAAACCATTGAATGAGAAGAAACCTCAGATATCTGCTCCTGCTGCAAAGGAACAGGTTGTGGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCCACTCAGCTTCCAAAGAAAGATGATGATGCAGAAGCCAAATCTGGAGGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAATCTTTGGAACTTACATGGAACTGTCTTCAGCCCTGGAAAAGATGTTTACTTGTTTTACAATCAGTCAATGTGGTTCTCATGGAGTTTCTGGTCGAGATAAGCTGAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGACTCATGCAAGAGACTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAAGTCGCAACTAG 924 0.4632 MSVPLEQGYVGLSEVPAMEGSDKFSQRTSGGLNLKATELRLGLPGSESPERDGGVEERNVHPLGMVKNLVSGAKRGFSDTIDGGSGKWLLSGNGGSEVGLGKDCGLFSPRGVGASAGKAESTNQQTSVVKDKVPLPPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMATQLPKKDDDAEAKSGGLYVKVSMDGAPYLRKVDLKIFGTYMELSSALEKMFTCFTISQCGSHGVSGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1759 307 Pfam AUX/IAA family 37 298 IPR033389 -
Pvu4g1759 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 299 IPR003311 GO:0005634|GO:0006355
Pvu4g1759 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 12 299 - -
Pvu4g1759 307 SUPERFAMILY CAD & PB1 domains 184 288 - -
Pvu4g1759 307 MobiDBLite consensus disorder prediction 113 153 - -
Pvu4g1759 307 ProSiteProfiles PB1 domain profile. 187 289 IPR000270 GO:0005515
Pvu4g1759 307 Gene3D - 181 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1759 Pvu-Chr4 44862449 44865654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1759 82 297 B3 DNA Binding Superfamily AT4G23980 24.336 2.00e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu4g1759 AUX_IAA 6.9e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1759 K14484 - gmx:100803754 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1759 4 44862449 44865654 Pvu4g1759 4 44862449 44865654 ECH
Pvu2g3204 2 47261835 47264779 Pvu4g1759 4 44862449 44865654 PCT