Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1754 ATGGATCCTCCGACCAAGAGTTGGGGCATCCACACGCGCTCCGAAATAACTGCCAAGTACGAGGTTATTGGTTGGGTCGGATCGGGTGCCTACGCCGACGTGTACGACGGGCGGCGCCGCTCGGACGGTGCGGCGGTGGCGCTGAAGGAGGTGCACGATTCCCACTCGGCGTCTCGCGAAATCGAAGCTCTGCGGGTCCTGCAAGGGTCCCAAAACGTGGTCGTTCTTCACGAGTTCTTCTGGCGCGAGGACGAGGACGCGGTTCTCGTGCTCGAGTTTCTCGGAACCGACCTCGCCGCCGTGATCGGAGAAGGTGGTGTCGGCGTCGGTGAGGTCAAGAGGTGGATGTTGCAGGCTCTGAGTGCTGTGGATGAGTGCCACCGGAATATGATCGTGCATAGAGACTTAAAGCCCGCGAATTTTCTGGTTTCCGATGATGGGGTGCTCAAGTTAGCAGATTTTGGACAGGCAAGGATACTTGTGGAGTCTGGATTCGATGGTCCCCAGGAAGATGATGATGTTTCAAATAGTGAAAGGTCACTCCAACAACATCGTGAAGCTATTTCCCAACTAGAGAACTTAAATCAAACTGGGCAGGAAAACCCAGATCACAGAAGCTTGAGTCATGAAGAATATTTCAGAGTTTTAGATGAGATGAAAACCAAGAGCTACTCTTATGACACTGACAAGGAAGCGAATATCCATGATGGAAACACCTCATGTCTTGCAACGTGCACAGCGAGTGACATAGATGATGAACTCTGCAAAGGCTCTTTTACCTACGAAGCTGAGGAGGAGGGAGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACACGCTGGTTTCGAGCTCCTGAGTTACTGTATGGATCCACAGACTATGGTTTAGAGGTTGATCTTTGGTCATTGGGGTGTGTTTTTGCTGAACTCTTAACATCGAAGCCATTGTTTCCTGGAACAAGTGATGTAGACCAGCTTAGCAGAATTGTTAGTGTTTTGGGGAACATCAATGAGGAAACTTGGCCTGGCTGTTCCAAACTTCCTGATTATGGAAGCATCTCTTTTTTTAAGGTGGAAAGCCCTTGTGGTCTTGAAGCATGCATGCCCAATTGCACCCCTGATGAAGTTTCCTTGGTCAAAAGATTGGTTTGTTATGATCCAATTAAGAGAGCCACAGCAATGGAGTTACTTGAAGACAAGTACCTAAGTGAAGTACCACTTCCTGTTCCAAATTCTGATTCTGATTTGGATGAGTTTGGAACTTTGAATATCACCACAACTGATTCTGATGTATCTGCACAAATCTCTTGA 1314 0.484 MDPPTKSWGIHTRSEITAKYEVIGWVGSGAYADVYDGRRRSDGAAVALKEVHDSHSASREIEALRVLQGSQNVVVLHEFFWREDEDAVLVLEFLGTDLAAVIGEGGVGVGEVKRWMLQALSAVDECHRNMIVHRDLKPANFLVSDDGVLKLADFGQARILVESGFDGPQEDDDVSNSERSLQQHREAISQLENLNQTGQENPDHRSLSHEEYFRVLDEMKTKSYSYDTDKEANIHDGNTSCLATCTASDIDDELCKGSFTYEAEEEGGNELGCLTSCVGTRWFRAPELLYGSTDYGLEVDLWSLGCVFAELLTSKPLFPGTSDVDQLSRIVSVLGNINEETWPGCSKLPDYGSISFFKVESPCGLEACMPNCTPDEVSLVKRLVCYDPIKRATAMELLEDKYLSEVPLPVPNSDSDLDEFGTLNITTTDSDVSAQIS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1754 437 Pfam Protein kinase domain 20 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1754 437 Pfam Protein kinase domain 270 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1754 437 SUPERFAMILY Protein kinase-like (PK-like) 14 409 IPR011009 -
Pvu4g1754 437 PANTHER CELL DIVISION PROTEIN KINASE 13 410 - -
Pvu4g1754 437 Gene3D Transferase(Phosphotransferase) domain 1 105 415 - -
Pvu4g1754 437 ProSiteProfiles Protein kinase domain profile. 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1754 437 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Pvu4g1754 437 Coils Coil 174 201 - -
Pvu4g1754 437 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Pvu4g1754 437 PANTHER CYCLIN-DEPENDENT KINASE 10 13 410 - -
Pvu4g1754 437 SMART serkin_6 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1754 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1754 Pvu-Chr4 44738292 44741003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1754 4 436 Core Cell Cycle Gene Families AT4G28980 56.118 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Pvu4g1754 Pkinase 1.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1754 - - gmx:548056 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1754 4 44738292 44741003 Pvu4g1754 4 44738292 44741003 ECH
Pvu2g3209 2 47319790 47322867 Pvu4g1754 4 44738292 44741003 PCT