Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1742 ATGGGTGAAGGCGAAGGAGCAGGTTGCGCTCCGAAGAATGCGTTGTCGTCGGAAGTTGTTGCGCCGGCGGTAGTGTCCACGGCGGCGCTGGAAGTTCCGGCAAGGAAGCTGGCGCGGCAGCTCGATTTCACGGGCGCGCCGGAGCATCCACAGCAGCAGCCGGTGGCGGTGTTGCCGTTGCCGCCGCAGGCGCCTCATGCAAGGGTTGGGAAACCAGAATCTCCAAAATCTAGATCAAGACCTAACTTTGAAATGAAAGATGCTACACCCAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAGCTGTATTGTGAATGTTTTGCATCAGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGAAAATGAAGCTGCCAGAAGAGAAGCTGTTGAAGCTACCTTGGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCTAGTAGCCCACATGGAACACGTGATAGCAGGGAGGAGGCTGGGGATGTTTTAATATTAGGAAAACATAACAAGGGGTGTCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGCGAATGCTTTCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAAAGGCAAGCTTTGTTTCATGGAGATCAAAATAACATGGCATATATTCAGCAAGCGGCAAACGCTGCCATAACTGGAGCTATTGGTTCCTCTGGTTATTCATCACCTCCGGTATCCAAGAAAAGAAAAGGTCAGGAACTCTTCTTTTGGCCTACAACCAAGGATCCATCCATTAGCAAGTTGGGACAACAGGTAAACCATGTCAGAGGTCCAGCACCTTCTTCATCTTTGTCACCTATCTCAGGCGCTCGTGTTGGAACTGCAACGTTAGGTCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATTATTCAACCACAGCACCTCAAGGAGCTATGCTCAGTTCTGGTGCTAGTATCAGGACAAGCTGCAAAGACACTTACAGACCAGAAAATTTTAATGGAAAAGCATGCAGAAGATCAGACAGAAACATCCCTTGCTTCGTCAAGTCAAGAGCCATTACCACCAAATCAAATGGAAGGTCATGTTGAGAAGACTGTGGCTGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCAGATGATTCCAGCTCCGATGGTGCTGATGTCCCAAAAGGAAGGCCAATGTCTCCTGGGACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTCATGACAGCCGCCTCCCCCATTGGGCCAATGGCTCATGCTTGCAATACATCTTCACAATTTCCTTATGGACAAGGAATGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACAAAGTTTAGGGATTTTCTCAATAGGGTTATCACTATGGGAGAAATCAATGAAACAAAGTGTTCTTCGTTGGCCAGAAATGAATTAGAGAATCAAAAGGACCCAATCATCAATGGCGTTGGAAATGCCAGCTCGCGTCAACATGGAGCCAGTAGCAATGGTGTTACCAAACCTGCTGCTTCACCTTTGGCAACAACTTCGACAAGTATGATCCCTGCCAATATTTCTGAAAATGGGGAATCTAAGGTCAAAATCGAAAAAGATATATGA 1683 0.451 MGEGEGAGCAPKNALSSEVVAPAVVSTAALEVPARKLARQLDFTGAPEHPQQQPVAVLPLPPQAPHARVGKPESPKSRSRPNFEMKDATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGDVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNMAYIQQAANAAITGAIGSSGYSSPPVSKKRKGQELFFWPTTKDPSISKLGQQVNHVRGPAPSSSLSPISGARVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKILMEKHAEDQTETSLASSSQEPLPPNQMEGHVEKTVADDCSSANQTDKISPDDSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPIGPMAHACNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARNELENQKDPIINGVGNASSRQHGASSNGVTKPAASPLATTSTSMIPANISENGESKVKIEKDI* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1742 560 PANTHER TESMIN/TSO1-RELATED 53 536 IPR028307 -
Pvu4g1742 560 MobiDBLite consensus disorder prediction 41 86 - -
Pvu4g1742 560 MobiDBLite consensus disorder prediction 512 560 - -
Pvu4g1742 560 MobiDBLite consensus disorder prediction 356 422 - -
Pvu4g1742 560 SMART CXC_2 176 217 IPR033467 -
Pvu4g1742 560 SMART CXC_2 91 131 IPR033467 -
Pvu4g1742 560 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 53 536 - -
Pvu4g1742 560 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 93 128 IPR005172 -
Pvu4g1742 560 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 179 213 IPR005172 -
Pvu4g1742 560 MobiDBLite consensus disorder prediction 512 547 - -
Pvu4g1742 560 MobiDBLite consensus disorder prediction 71 86 - -
Pvu4g1742 560 MobiDBLite consensus disorder prediction 388 402 - -
Pvu4g1742 560 ProSiteProfiles CRC domain profile. 92 216 IPR005172 -
Pvu4g1742 560 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1742 Pvu-Chr4 44641468 44648701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1742 32 510 CPP Transcription Factor Family AT4G29000 56.250 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pvu4g1742 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1742 - - gmx:100818116 991.104