Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1735 ATGTCAACAGCTCCAGCGCCGTCTTCGCCGCCCTCTAACAGCACAGCGCCTCCGCCGTCCACTCCGGCGGCTCCGCCGCCGACCACACCTTCCGCGCCGCCTCCAGCCACTCCCTCGTCACCTCCACCAACACCTCCATCGTCGCCGCCTCCAGCAACTCCCTCCGCGCCTCCGCCGGCGACACCTTCTTCTCCACCTCCGTCGACTCCCTCCTCTCCTCCTCCGTCTACTCCTGCGCCTCCAACCCCGCCGTCGAGCAATCCACCATCGAGCTCTCCACCCTCGCCTCCTTCGAGCTCTCCTCCGTCGCCGCCGTCGGGTACTCCACCTTCACCTCCGAGTAGCGGCGGAGGCGGCAACACTCCTTCCCCACCGTCTCGGAGCTCGCCTTCTCCTCCGTCCGGATCGACTCCCACCACTCCTTCTCCTCCGCCGTCGTCTTCGTCGGGTGTTTCGACTGGCGTGGTGGTCGGAATCGCCGTGGGGGCCGTCGCGGTTCTTGTTGTGTTAAGCATTCTCTGCATATGCTGTCGGAAGAAGAAGAGAAGACGCGACGAGGAGTACTATGCTCCGCCGCCGCAGCGACCCAAAGATGATTATGGTGGTCCCCCACGTCAATGGCAACACAATGTTCCCCCTCCGCAGGATCATGTGGTTTCAATGATGCCTCCAAAGTCGTCGCTTCCACCGGCTCCGGCTTATGCTGCTCAAACTGCTCCTCCCCCGCCTCCTTTGTTCACCAGCAGTGGTGGGTCTGGATCAAACTATTCAGGTGGTGAACCACTTCCTCCTCCTTCTCCAGGGCTTTCATTGGGGTTCTCTAAGAGCACTTTTACCTACGAGGAGTTGGCACGCGCCACAGATGGATTCTCTGATGCGAACCTCCTTGGACAAGGTGGATTTGGATATGTTCACAGAGGAATTCTTCCCAATGGCAAGGAGGTGGCAGTGAAGCAATTGAAGGCTGGAAGTGGGCAAGGGGAGCGTGAGTTCCAGGCTGAAGTTGAGATAATTAGCCGTGTTCATCACAAGCATCTTGTATCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGTTGCTTGTTTATGAATTTGTTCCAAACAACACATTGGAGTTCCATTTGCATGGAAGAGGACGACCTACCATGGATTGGCCCACAAGACTAAGAATTGCCTTAGGATCTGCTAAGGGACTGGCATATCTTCATGAAGATTGTCATCCTAAGATCATCCATCGTGATATCAAGTCTGCCAACATTCTTCTGGATTTTAAGTTTGAAGCCAAGGTTGCAGATTTCGGTCTTGCTAAGTTTTCTTCTGATCTTAATACTCATGTTTCTACACGAGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCTTCTAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTCCTTGAGTTAATAACTGGACGGAGACCAGTTGATAAAAATCAAACATTCATGGAGGATAGTTTGGTAGAATGGGCTAGACCTTTGCTCACACGAGCTTTGGAAGAGGATGATTTTGACTCTATTATTGACCCAAGGCTTCAGAATGATTATGACCCTAATGAGATGGCACGAATGGTGGCATGTGCTGCAGCTTCCACACGTCATTCGGCAAAGCGCAGACCAAGAATGAGCCAGGTTGTGCGTGCTCTGGAAGGAGATGTGTCTCTATCAGATCTTAACGAAGGAGTCAAACCTGGACACAGCACTATGTACAGTTCTCATGAAAGCTCAGATTATGATACTGTACAGTACAGGGAAGACATGAAAAAGTTCAGAAAAATGGCATTGGGAACTCAGGAATATGGTGCAAGCAGCGAATACAGTGCAGCTACAAGTGAGTATGGTTTAAACCCATCTGGCTCAAGCAGTGAAGCTCAGAGCCGCCAAACCACAAGGGAAATGGAAATGAGAAAGATGATGAAGAACAGTCAAGGTTTCAGTGGAAGCTCTTGA 1992 0.5201 MSTAPAPSSPPSNSTAPPPSTPAAPPPTTPSAPPPATPSSPPPTPPSSPPPATPSAPPPATPSSPPPSTPSSPPPSTPAPPTPPSSNPPSSSPPSPPSSSPPSPPSGTPPSPPSSGGGGNTPSPPSRSSPSPPSGSTPTTPSPPPSSSSGVSTGVVVGIAVGAVAVLVVLSILCICCRKKKRRRDEEYYAPPPQRPKDDYGGPPRQWQHNVPPPQDHVVSMMPPKSSLPPAPAYAAQTAPPPPPLFTSSGGSGSNYSGGEPLPPPSPGLSLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDLNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKNQTFMEDSLVEWARPLLTRALEEDDFDSIIDPRLQNDYDPNEMARMVACAAASTRHSAKRRPRMSQVVRALEGDVSLSDLNEGVKPGHSTMYSSHESSDYDTVQYREDMKKFRKMALGTQEYGASSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRKMMKNSQGFSGSS* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1735 663 MobiDBLite consensus disorder prediction 615 642 - -
Pvu4g1735 663 Gene3D Phosphorylase Kinase; domain 1 270 365 - -
Pvu4g1735 663 MobiDBLite consensus disorder prediction 183 270 - -
Pvu4g1735 663 MobiDBLite consensus disorder prediction 10 145 - -
Pvu4g1735 663 SUPERFAMILY Protein kinase-like (PK-like) 265 563 IPR011009 -
Pvu4g1735 663 MobiDBLite consensus disorder prediction 615 663 - -
Pvu4g1735 663 Pfam Protein tyrosine and serine/threonine kinase 295 562 IPR001245 GO:0004672|GO:0006468
Pvu4g1735 663 ProSiteProfiles Protein kinase domain profile. 290 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1735 663 SMART serkin_6 290 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1735 663 MobiDBLite consensus disorder prediction 571 591 - -
Pvu4g1735 663 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Pvu4g1735 663 MobiDBLite consensus disorder prediction 225 247 - -
Pvu4g1735 663 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 55 646 - -
Pvu4g1735 663 Gene3D Transferase(Phosphotransferase) domain 1 366 574 - -
Pvu4g1735 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Pvu4g1735 663 PRINTS Proline rich extensin signature 8 20 - -
Pvu4g1735 663 PRINTS Proline rich extensin signature 22 43 - -
Pvu4g1735 663 PRINTS Proline rich extensin signature 43 59 - -
Pvu4g1735 663 MobiDBLite consensus disorder prediction 1 152 - -
Pvu4g1735 663 CDD STKc_IRAK 296 565 - -
Pvu4g1735 663 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 55 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1735 Pvu-Chr4 44601151 44605163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1735 112 645 Trihelix Transcription Factor Family AT1G70460 51.391 5.92e-176 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pvu4g1735 PK_Tyr_Ser-Thr 2.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1735 - - gmx:100781944 860.136