Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1728 ATGATGGAACACAACATCATCGGCAACACCAACAACGGGATCGCACCGTTTGTCATAAAAACCTACAACATGGTTAACGATCCCACCACCGATAAACTCATCACGTGGGGCCCTGCCAACAACAGCTTCATCGTCCTCGATCCCCTCGACTTCTCCCACTCTCTGCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTACGCTTTCAGAAAGGTGGACCCGGATCGGTGGGAATTCGCGAACGAGTGGTTCCTGCGGGGGCAGAAGCATTTGTTGAGGAACATCGTGCGGCGGAAGCACGGCGGAGGGAGGAGCAACAATTCGCAATCGCATTTGCATGCCCTGAAGTTTGAGGAGTTGGACGACGATGCCATGGTGATGGAGATAGCGAGGTTGAAGGAGGAGCAGAAAGCTTTGGAGGAAGAGCTTCAAGGAATGAACAAGAGGTTAGAGACAACGGAAAAACGACCGCAACAAATGATGGCTTTTCTGTCGAAGGTTGTGGAAGACCCGCAGGTTCTCTCTCGGATTCTCCGAGAAAGAGAAAAAAAACACCTCGGCGAGAAAAAGCGACGCCTCCTCATTCCTCTGCCTTCGACGGCGGCGACCTCCTCCTCCTCCTCCTCCGGCATCAAGACGGAGTTCGAAGAAGACGAAGGTAACATCATGTCTTCATCGCCGGAGACGGGTTTGGAAATCGATAATAATAACAATATTATTTGTTCGCCGGTGACGGCGGGGTATTGGGGGGAACAAGGGTGTTATGGGTATAATTGCGGCGGAGTAACGACGCCGTTGACGGTGGTGACGCCGGCTGCGCCGGCGATGGGTGGAGGATATTTGGGGCGTGGGAGTTTGTTTGGGGAAATGGCGGCGGAGGGGAGTGCGCTGCCGCCTTATCCGTTTTCGCTGTTGGAAGGTGGGTTTTAG 954 0.5346 MMEHNIIGNTNNGIAPFVIKTYNMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYAFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRSNNSQSHLHALKFEELDDDAMVMEIARLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILREREKKHLGEKKRRLLIPLPSTAATSSSSSSGIKTEFEEDEGNIMSSSPETGLEIDNNNNIICSPVTAGYWGEQGCYGYNCGGVTTPLTVVTPAAPAMGGGYLGRGSLFGEMAAEGSALPPYPFSLLEGGF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1728 317 MobiDBLite consensus disorder prediction 207 233 - -
Pvu4g1728 317 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1728 317 Coils Coil 130 164 - -
Pvu4g1728 317 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1728 317 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1728 317 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1728 317 Gene3D - 9 107 IPR036388 -
Pvu4g1728 317 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1728 317 SUPERFAMILY "Winged helix" DNA-binding domain 12 106 IPR036390 -
Pvu4g1728 317 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 15 310 - -
Pvu4g1728 317 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 310 IPR027725 -
Pvu4g1728 317 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1728 Pvu-Chr4 44509237 44511021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1728 14 200 HSF AT3G24520 64.921 7.30e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu4g1728 HSF_DNA-bind 3.8e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1728 K09419 - gmx:100794896 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1728 4 44509237 44511021 Pvu4g1728 4 44509237 44511021 ECH