Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1716 ATGCCGACACGATCAACGGGAGCCATAACACAAGACTGGGATCCAATCGTTCTGCACAGGGCCAAGCCCAAGGCGCAGGACCTCCGTAACCCCAAGGCCGTGAACCAGGCGCTCCGGTCCGGCGCGGAGGTGCTCACGGTCAAGAAGTTCGACGCCGGTTCGAACCGGAAGGCCGGCGGTCCGGCCGTGAACGCGAGGAAGCTAGAGGAGGGGACGGAGCCAGCGGCGTTGGAGCGCGTGGCGGGAGAGGTCCGGCACGCGATCCAGAAGGCGCGTTTGGAGAAGAAGATGAGCCAGGCGGAGCTGGCGAAGCAGATCAACGAGCGAACGCAGGTGGTGCAGGAGTACGAAAATGGCAAGGCAGTGCCTAACCAGGCCGTGCTGGCCAAGATTGAGAGGGTTCTCGGTGTCAAGCTCAGGGGCAAAATCGGAAAGTGA 438 0.6279 MPTRSTGAITQDWDPIVLHRAKPKAQDLRNPKAVNQALRSGAEVLTVKKFDAGSNRKAGGPAVNARKLEEGTEPAALERVAGEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLAKIERVLGVKLRGKIGK* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1716 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 144 - -
Pvu4g1716 145 CDD HTH_XRE 87 139 IPR001387 -
Pvu4g1716 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Pvu4g1716 145 SMART mbf_short4 87 142 IPR001387 -
Pvu4g1716 145 Coils Coil 88 110 - -
Pvu4g1716 145 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 144 - -
Pvu4g1716 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Pvu4g1716 145 Gene3D - 71 145 IPR010982 GO:0003677
Pvu4g1716 145 SUPERFAMILY lambda repressor-like DNA-binding domains 85 139 IPR010982 GO:0003677
Pvu4g1716 145 Pfam Helix-turn-helix 88 139 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1716 Pvu-Chr4 44426684 44427426 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Pvu4g1716 MBF1 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1716 K03627 - twl:119996545 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1716 4 44426684 44427426 Pvu4g1716 4 44426684 44427426 ECH