Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1705 ATGGATCTAGAAGACAAGTTCCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCATCTAGTGCACAAAGTACTCCTGAAAAAAATGGTCATTCAGATGATGCTTCAAGAAGTTCAGAACTACTTCAGGAGTTCTTAAAACCTGGTCTTAAGAAGGAGCTTCTACGAACTTGCTTTGATAAGGACGAAAAGAACATTTCTTCAAAAAGCAGGATGACTGAAACTAAGTCAACCAGCAAGATTGTCAAGAAACAGGACTCAAAAAAAGTTTCTGGTGTCAGCAATCAGTCTTCTAGGAAGCAAAATCGCAAAGGAGAAAACCCTCTGCGGTTTGTACCAGTTCCTGACCCACCTAGTGATTTTGGACACTCAAACTCCTGGATTTGTAAGAATTCTGCTTGTCGAGCAGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAATAAGGATCCCAGCCTTTGGTTAGTATGCACATGTGAATCTGCTCAAGGGGACTCGTGTGGATTGTCTTGCCATATTGAGTGTGCTCTTCAACATGAAAAAGTTGGAGTTGTTGATCACGGACAACTGATGCAATTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAGCATAGCAAAAGATGCTCGACGTGTGGATGTATTATGTTTCAGGATATATTTGAGCTACAGGCTTTTGGATGGTACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAAGCAAAGGCTAAACTGGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAAATGGCACGTGGGATTGTCAGCAGACTCCCTATTGCTAGTGATGTCCAAAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGATTGGTTGGCCACTGTTCCCAATGTAAATCCAGAATCCAGAGAGGGTTCACTTCCCGCTGCCTGCAAGGTTGTGTTTGAAGAGGTGACTGCTTCCTCAGTCAAAATAATTTTAATTGAAATGTCAAATGCATCTTCTGGGGACATTAAGGGATACAAGCTATGGTATTACAAGAGCAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTTTTTCCCAAATCTCAGAGAAGGATTTTGTTATCCAACCTCCAACCTTGCACGGAATATACTTTTCGGATTGTATCTTTTACTGATACGGGTGATCTGGGTCACTCTGAGACCAAGTGTTTCACCAAGAGTGTTGAGATATTGGAAAAGAATTCATCTTCATCAGTGGCTGTGAATAAAAAAAAGGAGAACCTTCAAGCTGAATGCAATTCTTCTGGTTCCAAATTGGAGCCCAATCCCACATCAGCAGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATCTTGCATCTTACTTGGGCTCAAGAACAAGGTAGCTTTGAGGGGTTTTGCTGTGCTGACAAGAGAAATTGCTGTGGGCAGAGTGAAACTATCAAGCCTAGCAAACCACAAGAGCAGTTGCCTTCAGTTTCACGCGACCTTGATCTAAATGTTGTTTCAGTGCCTGATTTGAACGAAGAGCTGACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGTACCTTGCAGCAGGCTGTTGAGGCTGATGATGATGCTGCTTCTCATGATTTAGACAAAAATTTAGCAAGATCACATGGTAGTGGTGGTTCGCAAACATGGAACCATGGACAAACCGGAGAAGTTCCGGCTGTTGACTCACGTGGAGACGCAAGTAGGAAAAGAAAAACTAGCACAAATGAAGAGACACATGACTGTGACAGCACTTTGATAAATGGCTCTCCTTTACGCCCTTCTGATGGTCCATTCTCTTTAGATGAAAACTTTGAGTATTGTGTGAAAGTTATTCGCTGGCTAGAATGCCAGGGTCATATCAAGCAGGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCGACAGAGCAAGAACGAAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCTAGTAGTTTGGCAGGGCAACTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGTTCTGCAACAAGACTGTGACATCAAGTTAA 2160 0.4176 MDLEDKFLAKVSGVQSLSSSAQSTPEKNGHSDDASRSSELLQEFLKPGLKKELLRTCFDKDEKNISSKSRMTETKSTSKIVKKQDSKKVSGVSNQSSRKQNRKGENPLRFVPVPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKDARRVDVLCFRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADDWLATVPNVNPESREGSLPAACKVVFEEVTASSVKIILIEMSNASSGDIKGYKLWYYKSREESHTKDPVCVFPKSQRRILLSNLQPCTEYTFRIVSFTDTGDLGHSETKCFTKSVEILEKNSSSSVAVNKKKENLQAECNSSGSKLEPNPTSADSGFKVRDLGKILHLTWAQEQGSFEGFCCADKRNCCGQSETIKPSKPQEQLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLDKNLARSHGSGGSQTWNHGQTGEVPAVDSRGDASRKRKTSTNEETHDCDSTLINGSPLRPSDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKTVTSS* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1705 719 SUPERFAMILY Fibronectin type III 331 412 IPR036116 GO:0005515
Pvu4g1705 719 MobiDBLite consensus disorder prediction 13 28 - -
Pvu4g1705 719 MobiDBLite consensus disorder prediction 13 40 - -
Pvu4g1705 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 715 IPR044514 GO:0010048|GO:0040029
Pvu4g1705 719 CDD FN3 332 421 IPR003961 GO:0005515
Pvu4g1705 719 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Pvu4g1705 719 Gene3D Immunoglobulins 314 425 IPR013783 -
Pvu4g1705 719 MobiDBLite consensus disorder prediction 68 115 - -
Pvu4g1705 719 PANTHER VIN3-LIKE PROTEIN 1 55 715 - -
Pvu4g1705 719 MobiDBLite consensus disorder prediction 567 626 - -
Pvu4g1705 719 MobiDBLite consensus disorder prediction 87 101 - -
Pvu4g1705 719 MobiDBLite consensus disorder prediction 594 610 - -
Pvu4g1705 719 MobiDBLite consensus disorder prediction 572 587 - -
Pvu4g1705 719 Pfam Fibronectin type III domain 332 413 IPR003961 GO:0005515
Pvu4g1705 719 MobiDBLite consensus disorder prediction 68 86 - -
Pvu4g1705 719 ProSiteProfiles Fibronectin type-III domain profile. 329 426 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1705 Pvu-Chr4 44304307 44310976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1705 124 710 PHD Gene Family AT3G24440 49.420 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1705 - - gmx:100780157 1364.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1705 4 44304307 44310976 Pvu4g1705 4 44304307 44310976 ECH
Pvu2g3238 2 47549015 47556797 Pvu4g1705 4 44304307 44310976 PCT