Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1668 ATGTCAGGCATTCCAAGAGCAACTCGGCATCAAGGAATGGAATGTAAGAGAGGAAAAGAGAAGGTTCCAGCCAAAGAAGTAGACGTAAGAACAATGATGAAACTTAGAATTGTGTACACTGACCCTGATGCTACAGATTACTCAAGTGAAGAAGAAGATGATAAGTTGTTGAGCAACGGCTATCAGTTTGATAGTTGCTCCAAGCGTGTTGTCAAGGAAATCTTGCTTCCATGCATGCAAAGCAAATCACAAGAAGAGAGTTCTTCAGAAGATGCAAACAGTGAAAAGATCAAAGCAAGTTCATCAGGCTATTTTTCAAGTAGGAGAATGAGGAAATCATCAAGCATGTACAAAGGTGTTCAACGTAGGAAATGGGGGAAATATGTAGCAGAAATTAGAGACCCTATTGAAGGGGTCAGAGTGTGGCTTGGTACATTTGATACTGAACAAGAGGCTGCTATGGCTTATGAGAGGAAGAAGAATGAGTTTGAAAACTATTTGTTGGCTTCTAGCAAAAGGGATTTTGAGAGTTCCAAAGAAATGTTGTTTCATGCATCTCCATCATCAGTGCTTGATGTCAGCACTACAAAAGCTCCACCAGATGTTAATGACCTGAATGATTCAGTCAAAGAAAAGGTGAATGTGGAAAAAGTTGGTGAAGGAGGAGGCATTGATACAGAACCAGTTAATAGTGAAGATAATTCAACCCAACATTTGTTAGAGGAGTTTGTGCCATCATTGTTTGGTCATGAAGATTTCTATTTGGATGAAGCAGAGAAAGGGGGAATGTTGCTTGGTAATGACTTTTATAATTTCTCAGACAATGACATCAAAGGTGGTTTTATGTGGAATGTGGAACATGGGGAAGCCACTGTCCTTCCCCCTGTGGACAGTGCTTTTGATGAGTTAGCTTGGATTGATGAAACTCTAAATTTGGAAAACTCATAA 948 0.3977 MSGIPRATRHQGMECKRGKEKVPAKEVDVRTMMKLRIVYTDPDATDYSSEEEDDKLLSNGYQFDSCSKRVVKEILLPCMQSKSQEESSSEDANSEKIKASSSGYFSSRRMRKSSSMYKGVQRRKWGKYVAEIRDPIEGVRVWLGTFDTEQEAAMAYERKKNEFENYLLASSKRDFESSKEMLFHASPSSVLDVSTTKAPPDVNDLNDSVKEKVNVEKVGEGGGIDTEPVNSEDNSTQHLLEEFVPSLFGHEDFYLDEAEKGGMLLGNDFYNFSDNDIKGGFMWNVEHGEATVLPPVDSAFDELAWIDETLNLENS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1668 315 MobiDBLite consensus disorder prediction 1 24 - -
Pvu4g1668 315 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Pvu4g1668 315 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Pvu4g1668 315 Pfam AP2 domain 117 165 IPR001471 GO:0003700|GO:0006355
Pvu4g1668 315 PANTHER - 4 313 - -
Pvu4g1668 315 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 313 - -
Pvu4g1668 315 MobiDBLite consensus disorder prediction 81 100 - -
Pvu4g1668 315 Gene3D AP2/ERF domain 116 166 IPR036955 GO:0003700|GO:0006355
Pvu4g1668 315 ProSiteProfiles AP2/ERF domain profile. 116 176 IPR001471 GO:0003700|GO:0006355
Pvu4g1668 315 SMART rav1_2 116 170 IPR001471 GO:0003700|GO:0006355
Pvu4g1668 315 SUPERFAMILY DNA-binding domain 115 163 IPR016177 GO:0003677
Pvu4g1668 315 MobiDBLite consensus disorder prediction 10 24 - -
Pvu4g1668 315 CDD AP2 117 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1668 Pvu-Chr4 43964844 43965791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1668 28 178 AP2-EREBP Transcription Factor Family AT1G68550 38.854 1.17e-22 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu4g1668 AP2 2.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1668 - - pvu:PHAVU_004G157600g 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1668 4 43964844 43965791 Pvu4g1668 4 43964844 43965791 ECH
Pvu4g1668 4 43964844 43965791 Pvu2g3251 2 47666399 47666860 PCT