Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1665 ATGAACAACGAAATGAAAGAAGCAAGTGCATTAGGGGCTAGAACTGCACGAGCCTGCGAGAGCTGTCTAAAAGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTCTGCCATGGCTGTGACAACATGGTTCACTCAGCCAACCAATTAGCAAGCAGGCACCAAAGGGTCAAGCTTCAAACTGCATCCTCTAAGCTCAACTACTCTGACACCCTTAATCATAACAAAAAGGTAGCATGGCACAGTGGATTCACACGAAAAGCAAGAACACCACGCCACAGCACCAAGCTACAAGAGCAACAACAAAAGAAAATACATGAAGAAGGAGAAGAAGAACAACAACAACAACAAGTGTTTTTCAATAACACCATTAGTCTTCCCCTTGTGCCAGAGCTTGGAAGTGAAGAAGCACTGTATAATGATGAGAGTGAGGAGCAGCTATTGTGCCGGGTGCCCGTGTTTGATGCTGAGCTTTGTAGTGTATACAATGAAGTGAAGGAAGAGGTTTTGGCTGGTGAAGAAGTCTTTGACTTGGAAAATTTTTCTTGCGAGTTTCTGCCATCTGATATGGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTGCTTGGAAATGGAGCTGATGAGGATTCATCTGAGCATGTGAAAGGATCAGAAATTGTGCTTGATTGCAAAGAAGAAGACGATGAAATGGATGCATGTGTTGATGGAGTTGGAGAAAAAGATGCAATGGTGAAGGTCAAAGATGAAGAAGAACTCGATGCTGACACATCTTGCCATTTGGATTCGATTATTCTTGACATGAATTGGAATGATATTGTTGAGTCAGAATCACTTGCTCAGGAACAGGATAAGAAGGAGATGTTTTTGAGGCTAAACTATGAAGATGTTATTGCCGCTTGGGCCAGTCAAGGTTGTCCATGGACAACAGGAACCCCACCTAACTTCAACTCTGATGATTTCTTGCCAGGTTTCTTGGGTTCGAATGGTGAGGATGTTCTATGCTGTTATGGGGAAATGAGAAGTTTAAGAGGGCATGCAGATGGGGGAAGAGAAGCAAGAGTGTTAAGATACCGAGAGAAGAGAAGAACTCGTTTGTTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTGAACGCAGAGAAAAGACCAAGAATGAAAGGTAGATTTGTGAAGAGAACATCATTTCTTGGAGCCACTGTTTTGCCACCTTAG 1221 0.4308 MNNEMKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLASRHQRVKLQTASSKLNYSDTLNHNKKVAWHSGFTRKARTPRHSTKLQEQQQKKIHEEGEEEQQQQQVFFNNTISLPLVPELGSEEALYNDESEEQLLCRVPVFDAELCSVYNEVKEEVLAGEEVFDLENFSCEFLPSDMDLAEFAADVESLLGNGADEDSSEHVKGSEIVLDCKEEDDEMDACVDGVGEKDAMVKVKDEEELDADTSCHLDSIILDMNWNDIVESESLAQEQDKKEMFLRLNYEDVIAAWASQGCPWTTGTPPNFNSDDFLPGFLGSNGEDVLCCYGEMRSLRGHADGGREARVLRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFLGATVLPP* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1665 406 SMART bboxneu5 14 61 IPR000315 GO:0008270
Pvu4g1665 406 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 401 - -
Pvu4g1665 406 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 401 - -
Pvu4g1665 406 Pfam B-box zinc finger 16 61 IPR000315 GO:0008270
Pvu4g1665 406 MobiDBLite consensus disorder prediction 94 115 - -
Pvu4g1665 406 CDD Bbox1_BBX-like 18 59 - -
Pvu4g1665 406 Pfam CCT motif 353 395 IPR010402 GO:0005515
Pvu4g1665 406 MobiDBLite consensus disorder prediction 85 116 - -
Pvu4g1665 406 Coils Coil 99 119 - -
Pvu4g1665 406 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Pvu4g1665 406 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1665 Pvu-Chr4 43946612 43950275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1665 8 395 C2C2-CO-like Transcription Factor Family AT1G25440 42.254 4.20e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu4g1665 zf-B_box 4.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1665 - - gmx:100802113 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3253 2 47675673 47677770 Pvu4g1665 4 43946612 43950275 PCT