Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1659 ATGAATCTGATGGAGGAAAATCTGCCTCCTGGATTCAGGTTTCATCCTACAGATGAAGAACTCATCACATGTTATCTTACAAACAAGGTTTCTGATTCTAGCTTCACATCCAAAGCTATAGCAGTTGTTGATCTCAACAAATCTGAACCTTGGGACCTACCAGGTAAGGCCTCCATGGGAGAAAAAGAATGGTACTTCTTTAGCTTAAGAGACAGAAAGTATCCAACTGGACTTCGGACAAACCGAGCCACTGAATCAGGTTACTGGAAAACCACAGGGAAAGACAAGGAAATTTTTGGTAATGGCGTTTTGGTAGGAATGAAGAAAACCCTAGTCTTCTATAGGGGTAGAGCTCCGAGAGGAGAGAAAAGTAATTGGGTCATGCACGAATATAGACTTGAAAACAAGCATCACTTAAGACCTTCCAAGAATGAATGGGTGGTTTGCAGGGTTTTCCAAAAGAGCTTACAAGTGAAGAAACCACAGCAAACAAACTCATCACCACCAGAGTCCCCATGTGACACAGTCTCAATGGCCAATGAGTTTGGTGACTTTGAGCTTCCTAATCTGAATAGCATTGCAAATTCCTCAGGTGGACTCACCAACAATATTTCAGGAGACACTTTTATGAATGCTGATCTGAGTAATAGTGTTAACACAAACATGAACTTGGCCATGAATTGGGCAGTTGCAAGTGAGGTTCAGGTTCCCTCTCTTCCATCCCTGCCATGGCCTTCTGGGTTGCTGAGTCCAACTATTTCTGTAAATTCTTTGCTTCTGAAGGCATTGCAACTTAGGAGTTATCAACAAAGAGAAGCAGCAGATCATCTTGCATCATATATGGCTCAAGGAGTTTGCCAAGTTGTTGGAACTGACCTAAGTTCAAATCTGAGAGCCTCTTCTTCAAAAGTTCAAGAATGTATGCCACAGCAGCAGCAGCAACAACAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 981 0.4251 MNLMEENLPPGFRFHPTDEELITCYLTNKVSDSSFTSKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFGNGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLENKHHLRPSKNEWVVCRVFQKSLQVKKPQQTNSSPPESPCDTVSMANEFGDFELPNLNSIANSSGGLTNNISGDTFMNADLSNSVNTNMNLAMNWAVASEVQVPSLPSLPWPSGLLSPTISVNSLLLKALQLRSYQQREAADHLASYMAQGVCQVVGTDLSSNLRASSSKVQECMPQQQQQQQEQPFNLDSIW* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1659 326 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
Pvu4g1659 326 Gene3D NAC domain 17 158 IPR036093 GO:0003677|GO:0006355
Pvu4g1659 326 PANTHER BNACNNG63190D PROTEIN 5 269 - -
Pvu4g1659 326 ProSiteProfiles NAC domain profile. 8 154 IPR003441 GO:0003677|GO:0006355
Pvu4g1659 326 Pfam No apical meristem (NAM) protein 9 133 IPR003441 GO:0003677|GO:0006355
Pvu4g1659 326 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1659 Pvu-Chr4 43889426 43891660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1659 4 326 NAC Transcription Factor Family AT3G18400 57.485 1.35e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu4g1659 NAM 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1659 - - pvu:PHAVU_004G156700g 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3257 2 47709913 47713332 Pvu4g1659 4 43889426 43891660 PCT