Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1652 ATGGCGACGCCGCTGACGGGACTGCAGCACATGGACGGCGGCGGCGGAGTGGCGGTGCTGGCGAATCCGGTGAGCAAGGTGGATTCCTCCGCCAATGGCGGCGGCGGCTTCGGCCGGTCGCTGTCGGAATCGCCAATTCTGATATTCTCGTTCTTCCATAAGGCGATTCGGAACGAGCTCGACGCGCTGCACCGATTGGCGATGGCGTTCGCCACCGGAAACTGCTCCGACATCCAGCCCCTCTTCCAACGCTACCAGTTCCTCAGATCGATGTACAAACACCACTCCAATGCTGAGGATGAGGTGATTTTCCCAGCTCTAGATATACGGGTAAAGAATGTAGCACAAACATATTCCCTTGAACACCAGGGTGAAAGTGAAATTTTTGAACATCTATTTGAGCTGTTAAACTCTTCCATCCATAATGTTGAAAGTTTCCCAAAGGAGTTAGCATCCTGCACAGGAGCTCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAGGAGGAGCAGGTATTTCCACTGCTTCTTGAGAAGTTCTCCCTTGAGGAACAGGCCTCTTTAGTTTGGCAGTTTCTCTGTAGTATTCCAGTGAATATGATGACAAAATTTCTTCCGTGGCTCTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGGAAGTGCTTAAGTAAGATAGTTCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGAGAAGTCGTGCTAACAACACAGTTGAAAATTGTGTAGATCATTCTCAGGTGCGATGTAGTCGTAATCCTTCAACCCATCAGAATGGGAAAATAAAATGTGTATGTGAGCCCACAGCAACTGGGAAAAGGAAATATTCTACGTGTATCATAGATGTTTCTGATACCATGACAACACATCCTATAGATGAAATATTGTTCTGGCATAATGCGATAAAGAAAGAGTTAAATGAGATAGCAGCACAGACCAGAAAGATACAACTCTCTGGAGATTTTACTAACCTGTCAGCTTTCAATGAAAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAAAGTTTTCTTTCAGTAAAGAGCATGCTGAAGAAGAAAGCCAATTTAATGAGTTCCGTTCTTTAATTGAAAGTATTCAAAGTGAAGGAGCAACATCTAGTTCAGAAACTGAATTTTATTCAACATTGTGTTCACATGCTGATCATATATTGGAAACAATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTCTATCAAAGCTTATGCATGATGCCATTGAAGTTGATTGAGCGTGTCCTGCCATGGTTGACTAGTTCATTAACTGAAGATGAAGCACAGATGTTTTTGAAAAACATGCAATTGGCAG 1465 0.4355 MATPLTGLQHMDGGGGVAVLANPVSKVDSSANGGGGFGRSLSESPILIFSFFHKAIRNELDALHRLAMAFATGNCSDIQPLFQRYQFLRSMYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHQGESEIFEHLFELLNSSIHNVESFPKELASCTGALQTSVSQHMAKEEEQVFPLLLEKFSLEEQASLVWQFLCSIPVNMMTKFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVIFTWMEGRSRANNTVENCVDHSQVRCSRNPSTHQNGKIKCVCEPTATGKRKYSTCIIDVSDTMTTHPIDEILFWHNAIKKELNEIAAQTRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKFSFSKEHAEEESQFNEFRSLIESIQSEGATSSSETEFYSTLCSHADHILETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLTSSLTEDEAQMFLKNMQLA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1652 488 CDD Hr-like 306 435 - -
Pvu4g1652 488 CDD Hr-like 48 174 - -
Pvu4g1652 488 Pfam Hemerythrin HHE cation binding domain 303 437 IPR012312 -
Pvu4g1652 488 Pfam Hemerythrin HHE cation binding domain 53 176 IPR012312 -
Pvu4g1652 488 Gene3D nmb1532 protein domain like 44 194 - -
Pvu4g1652 488 Gene3D nmb1532 protein domain like 304 453 - -
Pvu4g1652 488 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 20 488 - -
Pvu4g1652 488 PANTHER CHY ZINC FINGER PROTEIN 20 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1652 Pvu-Chr4 43821667 43826280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1652 304 488 C2H2 Transcription Factor Family AT3G18290 25.346 2.79e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1652 K16276 - pvu:PHAVU_004G1561001 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3270 2 47797468 47807211 Pvu4g1652 4 43821667 43826280 PCT