Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1649 ATGTGTTGGCTATTGTTAATCACTTTGCCACACTCTCACTCTCAATCATCTCCCACTTTTGATTATTCAGTTTGTAAGAATCAGTCTTACAACTGTGGAAATCTCTCCAACATCTTCTATCCTTTCTGGGGTCACAATCGTTCTCCTGAATGTGGCAGTGGCGATCCTTTCAAACTCACCTGCAATGATAATAACACTACTTCAGTTCGAATTGCCTCACAAAACTTCACAGTGAAGGAGATCAACACCACTGCTCACACCATGAAACTGGTGCCAGCAGAAACTGTTGCAAATATCTGTTCTCCACTATCTGAGGATGTGAATGAGAGCCACACTGGTTTGTTCCAGGATTCTCCTTCAGTGCAAAAGATTACCATATTCTACTACTGTCCCCGCATCAAAAATTTCCATTATGGACACTTTATGTGCGGAGAAGATGCTATCACTTATTTTGCACTGGAATATGATAGGTTGTTCATTGATTATCCACAACTTGAAAGGTGCAAGCAAAGATTACACACATGGAGTGATGCTCAAATGGATTTTTCTGGTGGAGCTCTTGCTTTGGAAGAAAAACTGAATGAAGGGTTTGTGGTGAAGTATAATGTTTCTGAAACTTGCGCAAGATGCTTGGGAAGGGAAGGGCGTTGCTGGAGAGATGGTATCAAGAAACATGCAGTGAATTCATGCTACTATTGCACCAATGGATCTCATGGCATGCACTGTTCTCCCAAAACCATTACAAATAGTGTTACTGGTGCAACCGTTGCAATTATGTTGATATGTATAGCAATTTTTTGTCTAAGATACAAGTCACCAATCTTGCAGAGACACCTTGGCTCAAACTCTAAAAAATACAAATTTTCAGAAGTGAAGAAAATGACCAACTCTTTCAAAGTTAAACTAGGTGAAGGTGGTTTTGGTGCTGTATACAAAGGAGAGACATTGAATGGTTGCCCTGTGGCCATAAAGAAATTGAATGCAAAAAAAGGAAATGGTGAAAACTTTATCAACGAAGTTGCTAGTATTAGTAAAACTTCTCATGTTAATGTTGTTCAACTTCTTGGATTCTGTTTGGAAGGCAACAATAAAGTTCTCATTTATGAATTTATGTCTAATGGTTCTCTTGATAAGTTTATTTACAATAAGGGACTCAAAGATGCAACACTCTGCATTTTACATTTTGACATAAAACCACACAACATACTTTTGGATGAATTTTTTTGTCCCAAAATATCAGATTTTGGACTAGCAAAACTTTGCCCCGTGAAAGAGAGCACTATTTTCATGTCAGATCAAAGAGGAACAATAGGGTATAAAGCTCCTGAAGTATGGAATAGACATCTTGGTAGAGTTTCACACAAATCTGATGTTTATAGTTATAGAATGATGTTGTTAGAAATGGTGGGAGGGAGAAAAATTATTAATGCAGAAGCCAATCACACAAGTGAGATATACTTCCCACACTGGGCATACAACAGGCTAAAGCAGGGTGGAGAATTAAGACCTGATGGTGTCATAACCACAAAAGAACATGAAATGGCAAGGATAATGACTGTAGTGGGATTATGGTGTGTTCAAACAATTCCACATGATAGACCTACAATGACTAGAGTGATAGATATGCTAGAAGGCAACATGGATTCCTTGGAAATGCCTCCAAAACCTGATATTTCTTCTCCCATTAGTTGA 1692 0.383 MCWLLLITLPHSHSQSSPTFDYSVCKNQSYNCGNLSNIFYPFWGHNRSPECGSGDPFKLTCNDNNTTSVRIASQNFTVKEINTTAHTMKLVPAETVANICSPLSEDVNESHTGLFQDSPSVQKITIFYYCPRIKNFHYGHFMCGEDAITYFALEYDRLFIDYPQLERCKQRLHTWSDAQMDFSGGALALEEKLNEGFVVKYNVSETCARCLGREGRCWRDGIKKHAVNSCYYCTNGSHGMHCSPKTITNSVTGATVAIMLICIAIFCLRYKSPILQRHLGSNSKKYKFSEVKKMTNSFKVKLGEGGFGAVYKGETLNGCPVAIKKLNAKKGNGENFINEVASISKTSHVNVVQLLGFCLEGNNKVLIYEFMSNGSLDKFIYNKGLKDATLCILHFDIKPHNILLDEFFCPKISDFGLAKLCPVKESTIFMSDQRGTIGYKAPEVWNRHLGRVSHKSDVYSYRMMLLEMVGGRKIINAEANHTSEIYFPHWAYNRLKQGGELRPDGVITTKEHEMARIMTVVGLWCVQTIPHDRPTMTRVIDMLEGNMDSLEMPPKPDISSPIS* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1649 563 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 3 246 - -
Pvu4g1649 563 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 278 384 - -
Pvu4g1649 563 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 390 557 - -
Pvu4g1649 563 Pfam Wall-associated receptor kinase galacturonan-binding 25 91 IPR025287 GO:0030247
Pvu4g1649 563 SMART serkin_6 296 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1649 563 ProSitePatterns Protein kinases ATP-binding region signature. 302 325 IPR017441 GO:0005524
Pvu4g1649 563 ProSiteProfiles Protein kinase domain profile. 296 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1649 563 SUPERFAMILY Protein kinase-like (PK-like) 278 544 IPR011009 -
Pvu4g1649 563 Pfam Protein kinase domain 391 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1649 563 Gene3D Phosphorylase Kinase; domain 1 273 370 - -
Pvu4g1649 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Pvu4g1649 563 Gene3D Transferase(Phosphotransferase) domain 1 371 559 - -
Pvu4g1649 563 Pfam Protein tyrosine and serine/threonine kinase 298 383 IPR001245 GO:0004672|GO:0006468
Pvu4g1649 563 PANTHER RUST RESISTANCE KINASE LR10-RELATED 278 384 IPR045874 GO:0004672
Pvu4g1649 563 PANTHER RUST RESISTANCE KINASE LR10-RELATED 390 557 IPR045874 GO:0004672
Pvu4g1649 563 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 246 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1649 Pvu-Chr4 43778262 43783415 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1649 1 558 Receptor kinase-like Gene Family AT5G38260 35.552 3.87e-112 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu4g1649 Pkinase 3.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1649 - - pvu:PHAVU_004G155800g 1179.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1649 4 43778262 43783415 Pvu2g3274 2 47836194 47839193 PCT