Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1643 ATGTATGCACATGAATTGAAACTAAAGATGTTCCGCACTCTCACTCTCTTCTTTCTGTTCTCTGTAACTCCAACACTTGTTCTTCCAACTAAGTCTGATGTCAACTTCAACACTTCGTCTATGCTTCTGGCTCAAACCCACTCAAAAACCCTAAACAAAGTCGGTGATGATGTCTTCATGGCGTGTGATGATAGAAAAAATTGCAGCAGCAACAACAGCGTGGATAATCATTCTGCTTACGTGGCGCGAAGACTTGAGACAACTAATACTAATTCCAGCGATTGCAGTACCAATCCTTATATACGAGTTTGTTACAACATCGCACCAGAGGCACCACCATCGCCACCTGAACGATCAATTTCATTATCACCAGCACCAGCAACAGCGCCAGAATCAATGTTTTCACTTCCACCCGACTATTCTCAAGATTCAGATAACCATCAGCACACACGGACAATTATAATTATTATAGGTGTTGTAAGTGTGGTAATTGGAGGGTTTTTCTTCATAATTTATTGTTTTAGACGTAAGTCTTCAAGTAGACTGGTCAAATCTTGTTTTACCACAAACAATGATTCAAATATTGAAGCATTTTTAAGAAATCATGGAGCTATAACACAGAAAAGATACAAATTTTCAGAAGTGAAAAAAATGACTAATTCATTCAAAGTCAAACTTGGTCAAGGTGGTTTTGGTGCAGTATATGAAGGAAAACTACCAACAGGTAGCCCTGTGGCTGTAAAATTACTGAATGAATCCAAAGGAAATGGTGAAGATTTTATCAATGAGGTTCTCAGCATAAGTAGAACATTTCATGTTAATATTGTCACACTTCTTGGATTTTGTTTGGAAGGTCGCAAAAAGGCTCTCATCTACGAGTTTATGGCTAATGGTTCTTTGGATAAGTTTATCTACAAAAAAGGACTAGTATCAATTGTATCTTTGAGTTGGGATAATTTATATCAAATTTCAATAGGAATAGCTCGAGGGTTGGAATACTTGCATAGGGGCTGCAATACTAAAATTTTACATTTTGACATCAAGCCGCATAATATTCTTTTAGATGAGAATTTTTGTCCTAAAATATCAGATTTTGGACTAGCAAAGTTGTGTGTCATGAATGAAAGTATTATTTCCATGTCAGATGCTAGAGGAACAATGGGATATCTTGCTCCAGAAATGTGGAGTAGAAATTTTGGAAGAGTTTCTCAAAAGTCTGATGTGTATAGTTATGGAATGATGCTACTAGAAATGGTAGGAGGAAGAAAGAACATAAATGTTGAAGTTAGTCGTACAAGTGAGATATACTTTCCACATTTGGCATACAAAAGACTAGAGTTGGATAATGATGTCAGATCGAATGAAGTGATAAATACAGAAGAAAATGCTATTTCAAAGAGGATGACTATAGTAGGATTATGGTGCATCCAAACACTTCCTAATGATAGACCTACAATGACTAGAGTGATCGACATGTTGGAAGGTAACATGAATTTCTTAGAAACGCCTCCAAAACCTTTGTTTTCTTCTCCTACTAGATCAGAAACACAATCTTCCTCCTAA 1563 0.3647 MYAHELKLKMFRTLTLFFLFSVTPTLVLPTKSDVNFNTSSMLLAQTHSKTLNKVGDDVFMACDDRKNCSSNNSVDNHSAYVARRLETTNTNSSDCSTNPYIRVCYNIAPEAPPSPPERSISLSPAPATAPESMFSLPPDYSQDSDNHQHTRTIIIIIGVVSVVIGGFFFIIYCFRRKSSSRLVKSCFTTNNDSNIEAFLRNHGAITQKRYKFSEVKKMTNSFKVKLGQGGFGAVYEGKLPTGSPVAVKLLNESKGNGEDFINEVLSISRTFHVNIVTLLGFCLEGRKKALIYEFMANGSLDKFIYKKGLVSIVSLSWDNLYQISIGIARGLEYLHRGCNTKILHFDIKPHNILLDENFCPKISDFGLAKLCVMNESIISMSDARGTMGYLAPEMWSRNFGRVSQKSDVYSYGMMLLEMVGGRKNINVEVSRTSEIYFPHLAYKRLELDNDVRSNEVINTEENAISKRMTIVGLWCIQTLPNDRPTMTRVIDMLEGNMNFLETPPKPLFSSPTRSETQSSS* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1643 520 Gene3D Transferase(Phosphotransferase) domain 1 295 502 - -
Pvu4g1643 520 SMART serkin_6 220 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1643 520 ProSiteProfiles Protein kinase domain profile. 220 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1643 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 342 354 IPR008271 GO:0004672|GO:0006468
Pvu4g1643 520 MobiDBLite consensus disorder prediction 503 520 - -
Pvu4g1643 520 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 143 519 - -
Pvu4g1643 520 PANTHER RUST RESISTANCE KINASE LR10-RELATED 143 519 IPR045874 GO:0004672
Pvu4g1643 520 SUPERFAMILY Protein kinase-like (PK-like) 204 494 IPR011009 -
Pvu4g1643 520 MobiDBLite consensus disorder prediction 501 520 - -
Pvu4g1643 520 Pfam Protein kinase domain 223 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1643 520 Gene3D Phosphorylase Kinase; domain 1 195 294 - -
Pvu4g1643 520 ProSitePatterns Protein kinases ATP-binding region signature. 226 248 IPR017441 GO:0005524
Pvu4g1643 520 CDD STKc_IRAK 226 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1643 Pvu-Chr4 43715587 43724746 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1643 24 508 Receptor kinase-like Gene Family AT4G18250 44.531 4.39e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu4g1643 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1643 - - vra:106779094 659.833